RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 CLCC1Q96S66 551 aa11.21□□□□□ -0.61
HOXC9-202ENST00000504557 GINS4Q9BRT9 223 aa11.21□□□□□ -0.61
HOXC9-202ENST00000504557 CENPOQ9BU64 300 aa11.21□□□□□ -0.61
HOXC9-202ENST00000504557 FBXL15Q9H469 300 aa11.21□□□□□ -0.61
HOXC9-202ENST00000504557 G3V318 75 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 OR8U9P0C7N5 309 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 TGFBR1P36897 503 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 LSM3P62310 102 aaKnown RBP11.2□□□□□ -0.62
HOXC9-202ENST00000504557 KIR2DS1Q14954 304 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 CDNFQ49AH0 187 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 CXorf66Q5JRM2 361 aaPredicted RBP11.2□□□□□ -0.62
HOXC9-202ENST00000504557 FAM71F2Q6NXP2 309 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 TEX38Q6PEX7 206 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 OR8U1Q8NH10 309 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 NUDCD2Q8WVJ2 157 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 AGMATQ9BSE5 352 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 ST6GALNAC5Q9BVH7 336 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 GON7Q9BXV9 100 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 OR2D2Q9H210 308 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 WASHC3Q9Y3C0 194 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 A3GALT2U3KPV4 340 aa11.2□□□□□ -0.62
HOXC9-202ENST00000504557 IGKV1D-8A0A087WSZ0 117 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 TMEM235A6NFC5 223 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 OR5H14A6NHG9 310 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 H0YJW9 148 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 ATP6V0E1O15342 81 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 ECSCRQ19T08 205 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 C5orf64Q2M2E5 130 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 DEFB136Q30KP8 78 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 LIN54Q6MZP7 749 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 TSPAN14Q8NG11 270 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 OR5H6Q8NGV6 325 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 PTX4Q96A99 478 aa11.19□□□□□ -0.62
HOXC9-202ENST00000504557 ITGB1BP1O14713 200 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 TFAP2AP05549 437 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 MC5RP33032 325 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 SERPINB10P48595 397 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 GNG2P59768 71 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 RPS16P62249 146 aaKnown RBP11.18□□□□□ -0.62
HOXC9-202ENST00000504557 ETV3LQ6ZN32 361 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 ZNF695Q8IW36 515 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 COMMD1Q8N668 190 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 ZNF383Q8NA42 475 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 OR51J1Q9H342 316 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 VCX3AQ9NNX9 186 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 RHBDL2Q9NX52 303 aa11.18□□□□□ -0.62
HOXC9-202ENST00000504557 TRBV6-7A0A0A0MS04 114 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 IGHV7-81A0A0B4J1V7 117 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 RRHO14718 337 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 PROP1O75360 226 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 HLA-DRB1P01911 266 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 APOA2P02652 100 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 IGKV1-16P04430 117 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 FCER2P06734 321 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 THBS3P49746 956 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 FOXB2Q5VYV0 432 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 TMEM65Q6PI78 240 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 MRPL41Q8IXM3 137 aaKnown RBP11.17□□□□□ -0.62
HOXC9-202ENST00000504557 NPBQ8NG41 125 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 CASTOR1Q8WTX7 329 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 OR5B12Q96R08 314 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 CABLES2Q9BTV7 478 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 GHITMQ9H3K2 345 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 SLC35D1Q9NTN3 355 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 ZFP57Q9NU63 452 aa11.17□□□□□ -0.62
HOXC9-202ENST00000504557 METTL1Q9UBP6 276 aaKnown RBP11.17□□□□□ -0.62
HOXC9-202ENST00000504557 TRAV18A0A075B6X5 111 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 A0A087WXM4 84 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 TRAV41A0A0B4J266 112 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 FCN1O00602 326 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 AIREO43918 545 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 NDUFA3O95167 84 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 TNFAIP8O95379 198 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 HOXD3P31249 432 aaPredicted RBP11.16□□□□□ -0.62
HOXC9-202ENST00000504557 NDPQ00604 133 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 FOXE3Q13461 319 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 ARL6IP1Q15041 203 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 HACD4Q5VWC8 232 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 LINC00482Q8N8I6 264 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 OR5AN1Q8NGI8 311 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 RAX2Q96IS3 184 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 FAM103A1Q9BTL3 118 aaKnown RBP11.16□□□□□ -0.62
HOXC9-202ENST00000504557 SDHAF2Q9NX18 166 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 GAB2Q9UQC2 676 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 FBXO7Q9Y3I1 522 aa11.16□□□□□ -0.62
HOXC9-202ENST00000504557 TGP01266 2768 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 A0A1W2PN81 502 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 SLC25A17O43808 307 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 IGHG4P01861 327 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 IGF1P05019 195 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 ELANEP08246 267 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 OR5H8P0DN80 308 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 NFYAP23511 347 aaPredicted RBP11.15□□□□□ -0.62
HOXC9-202ENST00000504557 CHRNA7P36544 502 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 GNB1P62873 340 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 PSG5Q15238 335 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 ZNF260Q3ZCT1 412 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 KPRPQ5T749 579 aaPredicted RBP11.15□□□□□ -0.62
HOXC9-202ENST00000504557 WFDC9Q8NEX5 89 aa11.15□□□□□ -0.62
HOXC9-202ENST00000504557 MRAPQ8TCY5 172 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms