RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GYPAP02724 150 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 QRFPP83859 136 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 SLC16A13Q7RTY0 426 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 DRAM1Q8N682 238 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 OR4P4Q8NGL7 312 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 CACNA1IQ9P0X4 2223 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 ODAMA1E959 279 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 IGSF23A1L1A6 192 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 GGNQ86UU5 652 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 SLC24A4Q8NFF2 622 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 OR10G8Q8NGN5 311 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 PSMG3Q9BT73 122 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 MS4A5Q9H3V2 200 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 DENND4CQ5VZ89 1909 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 RANP62826 216 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF385CQ66K41 422 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 HARBI1Q96MB7 349 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 RARRES2Q99969 163 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM204Q9BSN7 226 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 NPVFQ9HCQ7 196 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF71Q9NQZ8 489 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 FAM90A27PA6NNH2 459 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 J3QR06 171 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 K7N7A8 449 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 CLN5O75503 358 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PTBP3O95758 552 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 SLC25A5P05141 298 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 UBE2L3P68036 154 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 TLE1Q04724 770 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PSG5Q15238 335 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 LHFPL1Q86WI0 220 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 IGKV3D-15A0A087WSY6 115 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 IFNL4K9M1U5 179 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 RD3LP0DJH9 198 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 ITLN1Q8WWA0 313 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 OR4C12Q96R67 309 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 RAB1BQ9H0U4 201 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 CXorf65A6NEN9 183 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 C9orf172C9J069 976 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 RBP4P02753 201 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PGA5P0DJD9 388 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 CEACAM3P40198 252 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 SCGB2A2Q13296 93 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 AARDQ4LEZ3 155 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 OR1L8Q8NGR8 309 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 GTF3AQ92664 365 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 WBP1Q96G27 269 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 TXNDC17Q9BRA2 123 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PPIAL4EA0A075B759 164 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PPIAL4DF5H284 164 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PHOX2AO14813 284 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PPIAL4FP0DN26 164 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 NTF3P20783 257 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 HIST1H3AP68431 136 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 MEF2BQ02080 365 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 SRSF7Q16629 238 aaKnown RBP eCLIP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM30BQ3MIR4 351 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 ACSM6Q6P461 480 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 TGIF2LYQ8IUE0 185 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 TGIF2LXQ8IUE1 241 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 WDYHV1Q96HA8 205 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 NDFIP1Q9BT67 221 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 HIF1ANQ9NWT6 349 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 NAT8BQ9UHF3 227 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 PPIAL4AQ9Y536 164 aa9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 ASCC3Q8N3C0 2202 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-205ENST00000503057 FCN1O00602 326 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 FGF16O43320 207 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 COX19Q49B96 90 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 C16orf82Q7Z2V1 217 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 BIVMQ86UB2 503 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 MARCH11A6NNE9 402 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 ETV2O00321 342 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 RHBDL1O75783 438 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 S1PR2O95136 353 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 FHITP49789 147 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 TNXAQ16473 311 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 OR4F17Q8NGA8 305 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 CALYQ9NYX4 217 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 CLCF1Q9UBD9 225 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 RALGAPA1Q6GYQ0 2036 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 CCKARP32238 428 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 RPL31P62899 125 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 SRSF4Q08170 494 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 FOXL2NBQ6ZUU3 175 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 OR8B3Q8NGG8 313 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 BSCL2Q96G97 398 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF714Q96N38 554 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 OR8B2Q96RD0 313 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 SFXN3Q9BWM7 321 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 PITPNC1Q9UKF7 332 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 PXMP4Q9Y6I8 212 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 PINLYPA6NC86 204 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 NEURL1O76050 574 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 PAX6P26367 422 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 SRP14P37108 136 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 PMS2P11Q13670 270 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 ACP7Q6ZNF0 438 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 CA5BP1Q8WTZ4 195 aa9.16□□□□□ -0.94
LIMCH1-205ENST00000503057 A0A1W2PPE3 182 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms