RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 OR8U1Q8NH10 309 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 MYOZ3Q8TDC0 251 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 C4orf3Q8WVX3 66 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 PTX4Q96A99 478 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 RAB3CQ96E17 227 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 GNB4Q9HAV0 340 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 RDH8Q9NYR8 311 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 WASHC3Q9Y3C0 194 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 FBXO7Q9Y3I1 522 aa11.62□□□□□ -0.55
LIMS3-204ENST00000482065 DNAH9Q9NYC9 4486 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 A0A075B6Q4 140 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 TRAV41A0A0B4J266 112 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 FCN1O00602 326 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 RRHO14718 337 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 GSTP1P09211 210 aaKnown RBP11.61□□□□□ -0.55
LIMS3-204ENST00000482065 GNB3P16520 340 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 RAB3BP20337 219 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 RANBP1P43487 201 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 KIAA0141Q14154 515 aaPredicted RBP11.61□□□□□ -0.55
LIMS3-204ENST00000482065 PLGLAQ15195 96 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 ECSCRQ19T08 205 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 NR2C2APQ86WQ0 139 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 SPARTQ8N0X7 666 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 OR5AN1Q8NGI8 311 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 OR10R2Q8NGX6 335 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 MAFIPQ8WZ33 124 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 CHCHD6Q9BRQ6 235 aa11.61□□□□□ -0.55
LIMS3-204ENST00000482065 RAB27BO00194 218 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 MFNGO00587 321 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 FABP7O15540 132 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 IGLV1-40P01703 118 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 FCGR3AP08637 254 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 GSTT2P0CG29 244 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 GSTT2BP0CG30 244 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 PSMB9P28065 219 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 MC5RP33032 325 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 LUMP51884 338 aaPredicted RBP11.6□□□□□ -0.55
LIMS3-204ENST00000482065 CX3CL1P78423 397 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 MRPS15P82914 257 aaKnown RBP11.6□□□□□ -0.55
LIMS3-204ENST00000482065 IGSF11Q5DX21 431 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 DEFB121Q5J5C9 76 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 UBE2UQ5VVX9 321 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 TMEM65Q6PI78 240 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 ZNF383Q8NA42 475 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 OR4A4PQ8NGN8 299 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 OR5B12Q96R08 314 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 CLCC1Q96S66 551 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 GHITMQ9H3K2 345 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 ZNF230Q9UIE0 474 aaPredicted RBP11.6□□□□□ -0.55
LIMS3-204ENST00000482065 ZNF221Q9UK13 617 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 A3GALT2U3KPV4 340 aa11.6□□□□□ -0.55
LIMS3-204ENST00000482065 A0A1W2PN81 502 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 BET1O15155 118 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 SOX15O60248 233 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 MRPS14O60783 128 aaKnown RBP11.59□□□□□ -0.55
LIMS3-204ENST00000482065 IGKV1-16P04430 117 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 TFAP2AP05549 437 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 HIST1H1DP16402 221 aaKnown RBP11.59□□□□□ -0.55
LIMS3-204ENST00000482065 RAB6AP20340 208 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 CHRNA7P36544 502 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 FHL3Q13643 280 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 C19orf54Q5BKX5 351 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 ZNF660Q6AZW8 331 aaPredicted RBP11.59□□□□□ -0.55
LIMS3-204ENST00000482065 ZNF491Q8N8L2 437 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 MINDY2Q8NBR6 621 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 OR11H1Q8NG94 326 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 OR5M8Q8NGP6 311 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 ABHD5Q8WTS1 349 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 CASTOR1Q8WTX7 329 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 FAM103A1Q9BTL3 118 aaKnown RBP11.59□□□□□ -0.55
LIMS3-204ENST00000482065 CABLES2Q9BTV7 478 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 METTL1Q9UBP6 276 aaKnown RBP11.59□□□□□ -0.55
LIMS3-204ENST00000482065 GAB2Q9UQC2 676 aa11.59□□□□□ -0.55
LIMS3-204ENST00000482065 M0R1X1 148 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 RBBP9O75884 186 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 OR8U9P0C7N5 309 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 EGR2P11161 476 aaPredicted RBP11.58□□□□□ -0.56
LIMS3-204ENST00000482065 GALP22466 123 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 GADD45AP24522 165 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 RAB9AP51151 201 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 GNB1P62873 340 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 PSG5Q15238 335 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 ASPHD1Q5U4P2 390 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 C5orf30Q96GV9 206 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 UBE2E2Q96LR5 201 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 TOLLIPQ9H0E2 274 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 OR2D2Q9H210 308 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 TPSG1Q9NRR2 321 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 TXNL4BQ9NX01 149 aaKnown RBP11.58□□□□□ -0.56
LIMS3-204ENST00000482065 ELF5Q9UKW6 265 aaPredicted RBP11.58□□□□□ -0.56
LIMS3-204ENST00000482065 VSIG4Q9Y279 399 aa11.58□□□□□ -0.56
LIMS3-204ENST00000482065 SEC14L6B5MCN3 397 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 I3L521 148 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 CA2P00918 260 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 SERPINB10P48595 397 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 CRIP2P52943 208 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-204ENST00000482065 RPS16P62249 146 aaKnown RBP11.57□□□□□ -0.56
LIMS3-204ENST00000482065 DGCR2P98153 550 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 ARFRP1Q13795 201 aa11.57□□□□□ -0.56
LIMS3-204ENST00000482065 OR1N2Q8NGR9 330 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms