RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 CD40LGP29965 261 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 CEACAM6P40199 344 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 RPS25P62851 125 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 CX3CL1P78423 397 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 MRPS15P82914 257 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 AKIRIN2Q53H80 203 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 RPL39P5Q59GN2 51 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF562Q6V9R5 426 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 OR4A4PQ8NGN8 299 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 OR1N2Q8NGR9 330 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 FAM3DQ96BQ1 224 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 ABHD14BQ96IU4 210 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 CYYR1Q96J86 154 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 RITA1Q96K30 269 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 TSNAXQ99598 290 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 C11orf54Q9H0W9 315 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 KLK15Q9H2R5 256 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 SLA2Q9H6Q3 261 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 NKX1-2Q9UD57 310 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 SCOCQ9UIL1 159 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF221Q9UK13 617 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 GAB2Q9UQC2 676 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF256Q9Y2P7 627 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 AK6Q9Y3D8 172 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 WSB1Q9Y6I7 421 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 NBEAL2Q6ZNJ1 2754 aa9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 TRAV1-2A0A0B4J238 106 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 A0A1W2PN81 502 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 TRDCB7Z8K6 153 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 H3BUA1 57 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 H7C2Y5 167 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 PDCD5O14737 125 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 LDLRAD4O15165 306 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 DENRO43583 198 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 APOA2P02652 100 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 TFAP2AP05549 437 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 LGALS1P09382 135 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 GALP22466 123 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 CHRNA7P36544 502 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 VEGFCP49767 419 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM50BP56557 158 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 NDPQ00604 133 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 FABP5Q01469 135 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 TAGLNQ01995 201 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 ECSCRQ19T08 205 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF260Q3ZCT1 412 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 C11orf87Q6NUJ2 197 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF367Q7RTV3 350 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 C5orf24Q7Z6I8 188 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 NRG4Q8WWG1 115 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 ARHGAP5-AS1Q96IT6 56 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 HDHD3Q9BSH5 251 aaPredicted RBP9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 CABLES2Q9BTV7 478 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 PECRQ9BY49 303 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 CCDC90BQ9GZT6 254 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 FBXL15Q9H469 300 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 GNB4Q9HAV0 340 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 OR1A1Q9P1Q5 309 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 RAB22AQ9UL26 194 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 NUBP2Q9Y5Y2 271 aa9.42□□□□□ -0.9
SQSTM1-207ENST00000481335 STAB2Q8WWQ8 2551 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 LINC01619G3V211 115 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 OVOL1O14753 267 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 MRPS14O60783 128 aaKnown RBP9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 SCTP09683 121 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 RAB6AP20340 208 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 GADD45AP24522 165 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 ECI1P42126 302 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 GNB1P62873 340 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 ARL6IP1Q15041 203 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 SRSF7Q16629 238 aaKnown RBP eCLIP9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 C2orf76Q3KRA6 126 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 ASPHD1Q5U4P2 390 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM68Q96MH6 324 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 PARP12Q9H0J9 701 aaKnown RBP9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 METTL1Q9UBP6 276 aaKnown RBP9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 FBXO7Q9Y3I1 522 aa9.41□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM272A0A1B0GTI8 110 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 FABP7O15540 132 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 SOX15O60248 233 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 CD3GP09693 182 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 MYL9P24844 172 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 LGALS7P47929 136 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 PSG5Q15238 335 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 ACTBL2Q562R1 376 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 PLAC9Q5JTB6 97 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 GLDNQ6ZMI3 551 aaPredicted RBP9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 Q6ZS49 121 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 PPP1R27Q86WC6 154 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 ARPC1AQ92747 370 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 FLYWCH2Q96CP2 140 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 RAB3CQ96E17 227 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 RBMXL1Q96E39 390 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 NDUFB11Q9NX14 153 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 RDH8Q9NYR8 311 aa9.4□□□□□ -0.9
SQSTM1-207ENST00000481335 KMT2CQ8NEZ4 4911 aaKnown RBP9.39□□□□□ -0.91
SQSTM1-207ENST00000481335 IGKV1-6A0A0C4DH72 117 aa9.39□□□□□ -0.91
SQSTM1-207ENST00000481335 METTL21EPA6NDL7 271 aa9.39□□□□□ -0.91
SQSTM1-207ENST00000481335 IFITM5A6NNB3 132 aa9.39□□□□□ -0.91
SQSTM1-207ENST00000481335 ANKRD65E5RJM6 399 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms