RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CLDN12P56749 244 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 TPPP2P59282 170 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 GNB1P62873 340 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 CX3CL1P78423 397 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 MLLT11Q13015 90 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-206ENST00000466591 FHL3Q13643 280 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 ZNF880Q6PDB4 577 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 DRAXINQ8NBI3 349 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-206ENST00000466591 CASTOR1Q8WTX7 329 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 FAM3DQ96BQ1 224 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 C11orf54Q9H0W9 315 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-206ENST00000466591 ISYNA1Q9NPH2 558 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 BLOC1S6Q9UL45 172 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 HSF4Q9ULV5 492 aa13.64□□□□□ -0.23
COL7A1-206ENST00000466591 LINC01619G3V211 115 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 ITGB1BP1O14713 200 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 CNIH1O95406 144 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 IGLV1-40P01703 118 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 TFAP2AP05549 437 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 SCTP09683 121 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 GADD45AP24522 165 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 MYL9P24844 172 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 QRFPP83859 136 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 TPBGQ13641 420 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 HES5Q5TA89 166 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 ZNF429Q86V71 674 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 MS4A10Q96PG2 267 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 MGLLQ99685 303 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 PECRQ9BY49 303 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 PARP12Q9H0J9 701 aaKnown RBP13.63□□□□□ -0.23
COL7A1-206ENST00000466591 Q9N2K0 584 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 ACOT13Q9NPJ3 140 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 NKX1-2Q9UD57 310 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-206ENST00000466591 U3KQK5 164 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 V9GY05 133 aa13.63□□□□□ -0.23
COL7A1-206ENST00000466591 A0A075B6Q4 140 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 TRBV6-6A0A0A6YYG2 114 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 TRDCB7Z8K6 153 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 I3L521 148 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 M0R1X1 148 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 BET1O15155 118 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 CA2P00918 260 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 TALDO1P37837 337 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 SERPINB10P48595 397 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 PITPNAQ00169 270 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 RUNX1Q01196 453 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 IRF3Q14653 427 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 C2orf76Q3KRA6 126 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 GRPEL2Q8TAA5 225 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 MYOZ3Q8TDC0 251 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 DCUN1D4Q92564 292 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 FLYWCH2Q96CP2 140 aaKnown RBP13.62□□□□□ -0.23
COL7A1-206ENST00000466591 ASCL2Q99929 193 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 RNF5Q99942 180 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 FAM103A1Q9BTL3 118 aaKnown RBP13.62□□□□□ -0.23
COL7A1-206ENST00000466591 RDH8Q9NYR8 311 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 DNAH3Q8TD57 4116 aa13.62□□□□□ -0.23
COL7A1-206ENST00000466591 SPDEFO95238 335 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 IGHV3-11P01762 117 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 MAP2K4P45985 399 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 HSPA13P48723 471 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 TMEM91Q6ZNR0 172 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 PRSS48Q7RTY5 328 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 PDPNQ86YL7 162 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 FAM89BQ8N5H3 189 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 MINDY2Q8NBR6 621 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 OR5AN1Q8NGI8 311 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 OR10J5Q8NHC4 309 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 ARPC1AQ92747 370 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 RAB3CQ96E17 227 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 CNBD2Q96M20 576 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 OR4C12Q96R67 309 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 GINS4Q9BRT9 223 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 ALX4Q9H161 411 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-206ENST00000466591 DUSP21Q9H596 190 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 SLC35D1Q9NTN3 355 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 SCOCQ9UIL1 159 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 RAB22AQ9UL26 194 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 SMAD5-AS1Q9Y6J3 95 aa13.61□□□□□ -0.23
COL7A1-206ENST00000466591 FABP7O15540 132 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 TRGV3P03979 118 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 LGALS1P09382 135 aaKnown RBP13.6□□□□□ -0.23
COL7A1-206ENST00000466591 SLURP1P55000 103 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 NDPQ00604 133 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 FABP5Q01469 135 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 ARFRP1Q13795 201 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 PSG5Q15238 335 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 LFNGQ8NES3 379 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 OR4A4PQ8NGN8 299 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 OR6Q1Q8NGQ2 317 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 SLA2Q9H6Q3 261 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 FBXO7Q9Y3I1 522 aa13.6□□□□□ -0.23
COL7A1-206ENST00000466591 C13orf42A0A1B0GVH6 325 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 METTL21EPA6NDL7 271 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 FCN1O00602 326 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 SLC25A17O43808 307 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 FXYD3Q14802 87 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 RTL8BQ17RB0 113 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 AKIRIN2Q53H80 203 aa13.59□□□□□ -0.23
COL7A1-206ENST00000466591 IZUMO2Q6UXV1 221 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms