RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CATP04040 527 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CSN3P07498 182 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 LINC00694P0DN24 101 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FCARP24071 287 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 ACRV1P26436 265 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 LEPP41159 167 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 P2RY1P47900 373 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 RPL34P49207 117 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CRISP3P54108 245 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CLDN15P56746 228 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TNFAIP6P98066 277 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 MYBPHQ13203 477 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 GLYATL3Q5SZD4 288 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CNIH2Q6PI25 160 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 LCNL1Q6ZST4 164 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CLEC20AQ6ZU45 233 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM71E2Q8N5Q1 922 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 NFAM1Q8NET5 270 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OR51A4Q8NGJ6 313 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OR1J1Q8NGS3 322 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 MBD3L1Q8WWY6 194 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 PSMF1Q92530 271 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FGF13Q92913 245 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 DDIT4LQ96D03 193 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 GPER1Q99527 375 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM133Q9H2Q1 129 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 NPVFQ9HCQ7 196 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FGF20Q9NP95 211 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SPANXCQ9NY87 97 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TAS2R8Q9NYW2 309 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 UQCR10Q9UDW1 63 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 ZFYVE26Q68DK2 2539 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SHROOM3Q8TF72 1996 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FRYQ5TBA9 3013 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 DUXBA0A1W2PPF3 345 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OTOL1A6NHN0 477 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 CCDC179H3BU77 68 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TAX1BP3O14907 124 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 HYAL3O43820 417 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 NEURL1O76050 574 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SPINK8P0C7L1 97 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 PSMB9P28065 219 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 NKX2-1P43699 371 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OR1E2P47887 323 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 KLK7P49862 253 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 HSPE1P61604 102 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC35A1P78382 337 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 EXOSC7Q15024 291 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 KIAA0040Q15053 153 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 ACOT6Q3I5F7 207 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TP53I3Q53FA7 332 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OLFML2AQ68BL7 652 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 RASL11AQ6T310 242 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC25A26Q70HW3 274 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 H2AFVQ71UI9 128 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SAXO1Q8IYX7 474 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OR8B12Q8NGG6 310 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2K2Q8NGT1 345 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 MYEOVQ96EZ4 313 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TSSK6Q9BXA6 273 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 MMP26Q9NRE1 261 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SCML2Q9UQR0 700 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF443Q9Y2A4 671 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 RPL36Q9Y3U8 105 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TRBV5-7A0A0A0MS05 114 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 LOC102725191A0A1B0GVB3 256 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 LILRA5A6NI73 299 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 F5H5P2 479 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 GABRPO00591 440 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SH2D1BO14796 132 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 PRKNO60260 465 aaPredicted RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 CA1P00915 261 aaPredicted RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 APOA2P02652 100 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 TRGC2P03986 189 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SFTA3P0C7M3 94 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 BCKDHAP12694 445 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 PGCP20142 388 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 G6PCP35575 357 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 RPL3P39023 403 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 GRB2P62993 217 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 HIST1H3AP68431 136 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 H3F3AP84243 136 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 CFHR1Q03591 330 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 CATR1Q13166 79 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 TIMM50Q3ZCQ8 353 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM78AQ5JUQ0 283 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 BHLHA9Q7RTU4 235 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 RBMXL3Q8N7X1 1067 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 WDR31Q8NA23 367 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 OR5D16Q8NGK9 328 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 OR6K6Q8NGW6 343 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2AJ1Q8NGZ0 328 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4C3Q8NH37 302 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 C15orf40Q8WUR7 153 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC38A5Q8WUX1 472 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNRF4Q8WWF5 429 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 ELSPBP1Q96BH3 223 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 RTP4Q96DX8 246 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 ZMYND19Q96E35 227 aaPredicted RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms