RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ATP6V0E1O15342 81 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 PROP1O75360 226 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 IGLV1-40P01703 118 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 FCGR3AP08637 254 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 CD3GP09693 182 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 GADD45AP24522 165 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 SERPINB10P48595 397 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 KRTAP10-11P60412 298 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 FHL3Q13643 280 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 KIR2DS1Q14954 304 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 C19orf54Q5BKX5 351 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 C22orf42Q6IC83 251 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 C4orf3Q8WVX3 66 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 RNF5Q99942 180 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 RDH8Q9NYR8 311 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 KIAA1456Q9P272 454 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 WASHC3Q9Y3C0 194 aa9.41□□□□□ -0.9
USP40-210ENST00000454354 DNAH9Q9NYC9 4486 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 K7EIL1 84 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 CCL24O00175 119 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 RRHO14718 337 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 FABP7O15540 132 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 HIST1H1DP16402 221 aaKnown RBP9.4□□□□□ -0.9
USP40-210ENST00000454354 PSMB9P28065 219 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 MRPS15P82914 257 aaKnown RBP9.4□□□□□ -0.9
USP40-210ENST00000454354 NDPQ00604 133 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 LIN54Q6MZP7 749 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 GLDNQ6ZMI3 551 aaPredicted RBP9.4□□□□□ -0.9
USP40-210ENST00000454354 Q6ZS49 121 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 MINDY2Q8NBR6 621 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.4□□□□□ -0.9
USP40-210ENST00000454354 DPF1Q92782 380 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 PARP11Q9NR21 331 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 TXNL4BQ9NX01 149 aaKnown RBP9.4□□□□□ -0.9
USP40-210ENST00000454354 STUB1Q9UNE7 303 aa9.4□□□□□ -0.9
USP40-210ENST00000454354 TNCP24821 2201 aa9.4□□□□□ -0.91
USP40-210ENST00000454354 TRBV6-7A0A0A0MS04 114 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 A0A0B4J203 849 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 TRAV41A0A0B4J266 112 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 METTL21EPA6NDL7 271 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 NOTOA8MTQ0 251 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 G3V318 75 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 SPDEFO95238 335 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 GNB3P16520 340 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 RUNX1Q01196 453 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 KIAA0141Q14154 515 aaPredicted RBP9.39□□□□□ -0.91
USP40-210ENST00000454354 SRSF7Q16629 238 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP40-210ENST00000454354 DEFB136Q30KP8 78 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 ZNF660Q6AZW8 331 aaPredicted RBP9.39□□□□□ -0.91
USP40-210ENST00000454354 ZNF773Q6PK81 442 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 TPRA1Q86W33 373 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 UBE2E2Q96LR5 201 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 DUX3Q96PT4 197 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 FBXL15Q9H469 300 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP40-210ENST00000454354 ZNF221Q9UK13 617 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 GAB2Q9UQC2 676 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 FBXO7Q9Y3I1 522 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 WSB1Q9Y6I7 421 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 SORL1Q92673 2214 aa9.39□□□□□ -0.91
USP40-210ENST00000454354 H7C2Y5 167 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 I3L521 148 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 TFAP2AP05549 437 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 GSTT2P0CG29 244 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 GSTT2BP0CG30 244 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 HOXD3P31249 432 aaPredicted RBP9.38□□□□□ -0.91
USP40-210ENST00000454354 CX3CL1P78423 397 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 ARL6IP1Q15041 203 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 IGSF11Q5DX21 431 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 PDPNQ86YL7 162 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 TCTEX1D1Q8N7M0 179 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 ZNF491Q8N8L2 437 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 ZNF383Q8NA42 475 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 CENPOQ9BU64 300 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 RNF150Q9ULK6 438 aa9.38□□□□□ -0.91
USP40-210ENST00000454354 A0A075B6Q4 140 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 WI2-2373I1.2A0A1W2PRP0 233 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 BET1O15155 118 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 APOA2P02652 100 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 IGKV1-16P04430 117 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 GSTP1P09211 210 aaKnown RBP9.37□□□□□ -0.91
USP40-210ENST00000454354 EGR2P11161 476 aaPredicted RBP9.37□□□□□ -0.91
USP40-210ENST00000454354 DTYMKP23919 212 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 RAB9AP51151 201 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 PLGLAQ15195 96 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 PSG5Q15238 335 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 TMEM65Q6PI78 240 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 DRAXINQ8NBI3 349 aaPredicted RBP9.37□□□□□ -0.91
USP40-210ENST00000454354 OR5M8Q8NGP6 311 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 OR10J5Q8NHC4 309 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 C5orf30Q96GV9 206 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 TSNAXQ99598 290 aaKnown RBP9.37□□□□□ -0.91
USP40-210ENST00000454354 OR2D2Q9H210 308 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 KLK15Q9H2R5 256 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 SSR3Q9UNL2 185 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 VSIG4Q9Y279 399 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 NUBP2Q9Y5Y2 271 aa9.37□□□□□ -0.91
USP40-210ENST00000454354 SMIM30A4D0T7 59 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 M0R1X1 148 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 FCN1O00602 326 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms