RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TCF23Q7RTU1 214 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 FAM19A3Q7Z5A8 133 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 MTERF4Q7Z6M4 381 aaKnown RBP2.24□□□□□ -2.05
USP40-204ENST00000427947 GID4Q8IVV7 300 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 STK40Q8N2I9 435 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 OR51D1Q8NGF3 324 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 OR2K2Q8NGT1 345 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ZNRF2Q8NHG8 242 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 TLCD1Q96CP7 247 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 OLFM3Q96PB7 478 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SELENOSQ9BQE4 189 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 PRSS27Q9BQR3 290 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 PECRQ9BY49 303 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SLC22A13Q9Y226 551 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 HDGFL3Q9Y3E1 203 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 DSPP15924 2871 aaKnown RBP2.24□□□□□ -2.05
USP40-204ENST00000427947 COL4A5P29400 1685 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 FHAD1B1AJZ9 1412 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ADGRB3O60242 1522 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 PHLPP1O60346 1717 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 TMEM131Q92545 1883 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 IGKV1-6A0A0C4DH72 117 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 B4DEV8 164 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CNMDO75829 334 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 NSA2O95478 260 aaKnown RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 IL6P05231 212 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 OR4A8P0C604 315 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 HIST1H1EP10412 219 aaKnown RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 IL1RNP18510 177 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CCR7P32248 378 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 TGFBR1P36897 503 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 SLCO1A2P46721 670 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 H2BFSP57053 126 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 GABARAPL2P60520 117 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 LSM6P62312 80 aaKnown RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 HPCAP84074 193 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 FMODQ06828 376 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 KRTAP13-2Q52LG2 175 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 DNLZQ5SXM8 178 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 GLYATQ6IB77 296 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CCDC121Q6ZUS5 278 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 S100A7AQ86SG5 101 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 OSR2Q8N2R0 312 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 SLC25A45Q8N413 288 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 NATD1Q8N6N6 113 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 OR5B17Q8NGF7 314 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 OR10D3Q8NH80 312 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CIRBP-AS1Q8TBR5 109 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 C16orf78Q8WTQ4 265 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 EEF1AKMT1Q8WVE0 214 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 TMBIM1Q969X1 311 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CLDN23Q96B33 292 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 CEP19Q96LK0 163 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 THTPAQ9BU02 230 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 C9orf16Q9BUW7 83 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 TSGA10Q9BZW7 698 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 OR51I1Q9H343 314 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 VSIRQ9H7M9 311 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 PLEKHF2Q9H8W4 249 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 TMEM216Q9P0N5 145 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 MARCOQ9UEW3 520 aaPredicted RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 ATPIF1Q9UII2 106 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 DKKL1Q9UK85 242 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 LSM5Q9Y4Y9 91 aaKnown RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 RNF17Q9BXT8 1623 aaKnown RBP2.23□□□□□ -2.05
USP40-204ENST00000427947 WRNQ14191 1432 aaPredicted RBP eCLIP2.23□□□□□ -2.05
USP40-204ENST00000427947 OBSCNQ5VST9 7968 aa2.23□□□□□ -2.05
USP40-204ENST00000427947 PRDM2Q13029 1718 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 KMT2DO14686 5537 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ABCA5Q8WWZ7 1642 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 CENPVL3A0A0U1RRI6 287 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ARGFXA6NJG6 315 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 EVPLLA8MZ36 301 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 K7EQS6 105 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 KRT75O95678 551 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 HLA-DRAP01903 254 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 PRB1P04280 392 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 REG1AP05451 166 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 FBP1P09467 338 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 GTF2F2P13984 249 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 CD36P16671 472 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ORM2P19652 201 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 REG1BP48304 166 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 GDI2P50395 445 aaKnown RBP2.22□□□□□ -2.05
USP40-204ENST00000427947 CXCR4P61073 352 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 SRSF6Q13247 344 aaKnown RBP2.22□□□□□ -2.05
USP40-204ENST00000427947 PDK2Q15119 407 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 LRRC26Q2I0M4 334 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 TRMT12Q53H54 448 aaKnown RBP2.22□□□□□ -2.05
USP40-204ENST00000427947 MESTQ5EB52 335 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 SPIN3Q5JUX0 258 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 HENMT1Q5T8I9 393 aaKnown RBP2.22□□□□□ -2.05
USP40-204ENST00000427947 OR10K2Q6IF99 312 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ATP5L2Q7Z4Y8 100 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 DPPA2Q7Z7J5 298 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 MARCH3Q86UD3 253 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ZBTB8OSQ8IWT0 167 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 ZIC4Q8N9L1 334 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 OR9A2Q8NGT5 310 aa2.22□□□□□ -2.05
USP40-204ENST00000427947 OR1P1Q8NH06 330 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms