RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KRTAP24-1Q3LI83 254 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 NCR3LG1Q68D85 454 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 TMEM42Q69YG0 159 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 STUMQ69YW2 141 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 UTS2BQ765I0 119 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 SERPINA12Q8IW75 414 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 C11orf53Q8IXP5 236 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 KIR3DL3Q8N743 410 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 OR5T2Q8NGG2 359 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 OR5D13Q8NGL4 314 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 RNASE8Q8TDE3 154 aaKnown RBP5.1□□□□□ -1.59
USP40-202ENST00000409945 NPRL2Q8WTW4 380 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 S100A13Q99584 98 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 SLC6A7Q99884 636 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 RHOFQ9HBH0 211 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 CKLFQ9UBR5 152 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 RPUSD1Q9UJJ7 312 aaKnown RBP5.1□□□□□ -1.59
USP40-202ENST00000409945 COL6A5A8TX70 2615 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 A0A1B0GTI1 187 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 PQLC2LA1A4F0 135 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 H3BSH0 61 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GABRPO00591 440 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 NOS1APO75052 506 aaPredicted RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 CRYBA1P05813 215 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 HCKP08631 526 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 PGA5P0DJD9 388 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 ANOS1P23352 680 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 PRDX2P32119 198 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 NUP62P37198 522 aaPredicted RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 ARF6P62330 175 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 MXD1Q05195 221 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 RPL22L1Q6P5R6 122 aaKnown RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 METAP1DQ6UB28 335 aaPredicted RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 C12orf54Q6X4T0 127 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 ZNF841Q6ZN19 808 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 ACP7Q6ZNF0 438 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 Q6ZSR3 168 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 KCTD9Q7L273 389 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GDPD3Q7L5L3 318 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 SNX29P2Q8IUI4 249 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 LAX1Q8IWV1 398 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 PRSS35Q8N3Z0 413 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 MS4A15Q8N5U1 240 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GDPD1Q8N9F7 314 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 ASCC1Q8N9N2 400 aaKnown RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 ANGPTL6Q8NI99 470 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GPR148Q8TDV2 347 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 ACOT12Q8WYK0 555 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 EMG1Q92979 244 aaKnown RBP5.09□□□□□ -1.59
USP40-202ENST00000409945 FGGYQ96C11 551 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 PELI1Q96FA3 418 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GPER1Q99527 375 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 TMED9Q9BVK6 235 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 C19orf24Q9BVV8 132 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 WDR13Q9H1Z4 485 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 CTSZQ9UBR2 303 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 OPN4Q9UHM6 478 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 GPR132Q9UNW8 380 aa5.09□□□□□ -1.59
USP40-202ENST00000409945 TRBV5-5A0A0J9YX44 114 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 A6NIN4 97 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 RFPL4AA6NLU0 287 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 RFPL4AL1F8VTS6 287 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 M0R1W7 72 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 RHBDL1O75783 438 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 LALBAP00709 142 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 STAG3L3P0CL85 134 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 PSG2P11465 335 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 ATF1P18846 271 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 RAB3AP20336 220 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 MYL9P24844 172 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 HTR2BP41595 481 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 POU3F4P49335 361 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 COTL1Q14019 142 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 TPRA1Q86W33 373 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 FAM216BQ8N7L0 139 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 SIGLECL1Q8N7X8 197 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 ZFP41Q8N8Y5 198 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 OR10V1Q8NGI7 309 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 C22orf15Q8WYQ4 148 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 SDSLQ96GA7 329 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 DIRAS2Q96HU8 199 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 DCTN5Q9BTE1 182 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 METTL8Q9H825 291 aaKnown RBP5.09□□□□□ -1.6
USP40-202ENST00000409945 SRD5A3Q9H8P0 318 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 HEXA-AS1Q9H8Q6 139 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 V9GYH0 126 aa5.09□□□□□ -1.6
USP40-202ENST00000409945 FABP12A6NFH5 140 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SMIM1B2RUZ4 78 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 HSBP1L1C9JCN9 74 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SH2D1BO14796 132 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SULT1B1O43704 296 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 FBP1P09467 338 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 PRTN3P24158 256 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 KIR3DL2P43630 455 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 RPL31P62899 125 aaKnown RBP5.08□□□□□ -1.6
USP40-202ENST00000409945 PAX2Q02962 417 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 UBE2V2Q15819 145 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SPIN3Q5JUX0 258 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 FAM131AQ6UXB0 335 aa5.08□□□□□ -1.6
USP40-202ENST00000409945 SLC25A26Q70HW3 274 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms