RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 OR1L1Q8NH94 360 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 C20orf24Q9BUV8 137 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 MAGT1Q9H0U3 335 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 SCTP09683 121 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 RPL7L1Q6DKI1 246 aaKnown RBP8.69□□□□□ -1.02
COL6A3-205ENST00000392004 FDX2Q6P4F2 183 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 TGIF2LYQ8IUE0 185 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 TMEM217Q8N7C4 229 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 SDSLQ96GA7 329 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 RAB18Q9NP72 206 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 A6NNC1 897 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 ADAP1O75689 374 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 THBDP07204 575 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 PMELP40967 661 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 LPAR6P43657 344 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 RBM11P57052 281 aaKnown RBP8.69□□□□□ -1.02
COL6A3-205ENST00000392004 PIGPP57054 158 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 GNMTQ14749 295 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 CLEC12BQ2HXU8 276 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 OR5D13Q8NGL4 314 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 TERB2Q8NHR7 220 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 LHX4Q969G2 390 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 ISOC2Q96AB3 205 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 C2orf50Q96LR7 162 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 RNF126Q9BV68 326 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 HEYLQ9NQ87 328 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-205ENST00000392004 CYTL1Q9NRR1 136 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 C7orf77A4D0Y5 90 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 RPL36A-HNRNPH2H7BZ11 118 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 DVL1O14640 695 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 IFNA10P01566 189 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 FAM157CP0CG43 387 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 RAB5AP20339 215 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 CFPP27918 469 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 FAM166AQ6J272 317 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 AQP3Q92482 292 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 OR6C3Q9NZP0 311 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 NSG2Q9Y328 171 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 LOC105371242A0A075B767 164 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 K7EPK0 472 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 SFT2D2O95562 160 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 CAMLGP49069 296 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 MST1LQ2TV78 715 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 ACTBL2Q562R1 376 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 AWAT1Q58HT5 328 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 FAM71E2Q8N5Q1 922 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 C11orf44Q8N8P7 122 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 OR4A16Q8NH70 328 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 PTX4Q96A99 478 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 SMIM8Q96KF7 97 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 TOLLIPQ9H0E2 274 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 GAL3ST2Q9H3Q3 398 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 FAM212BQ9NTI7 297 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-205ENST00000392004 MSGN1A6NI15 193 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 SERPINE3A8MV23 424 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 PTBP3O95758 552 aaKnown RBP8.68□□□□□ -1.02
COL6A3-205ENST00000392004 CLDN1O95832 211 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 FSTP19883 344 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 RAB32Q13637 225 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 ZNF260Q3ZCT1 412 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 NCMAPQ5T1S8 102 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 DHRS11Q6UWP2 260 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 PNKDQ8N490 385 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 RTN4IP1Q8WWV3 396 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-205ENST00000392004 OR5AC2Q9NZP5 309 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 INSIG2Q9Y5U4 225 aa8.68□□□□□ -1.02
COL6A3-205ENST00000392004 C2CD3Q4AC94 2353 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 TRBV6-7A0A0A0MS04 114 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 BORCS7-ASMTA0A0B4J1R7 106 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 F2RL2O00254 374 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 CST4P01036 141 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 CRYGSP22914 178 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 MRPS11P82912 194 aaKnown RBP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 TESK1Q15569 626 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 ETV3LQ6ZN32 361 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 PARP12Q9H0J9 701 aaKnown RBP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 PARP11Q9NR21 331 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 KIAA1456Q9P272 454 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 IL19Q9UHD0 177 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 JTBO76095 146 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 ARG1P05089 322 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 PSG2P11465 335 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 SULT1A2P50226 295 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 KCNMB1Q16558 191 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 MAJINQ3KP22 176 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 FAM24BQ8N5W8 94 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 AQP10Q96PS8 301 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 PBDC1Q9BVG4 233 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 GNB4Q9HAV0 340 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 TMEM210A6NLX4 147 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 H0YIZ8 118 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 ETV2O00321 342 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 RPS10P46783 165 aaKnown RBP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 KIAA0141Q14154 515 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 EDARADDQ8WWZ3 215 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 SSX3Q99909 188 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 LPAR5Q9H1C0 372 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.67□□□□□ -1.02
COL6A3-205ENST00000392004 ZNF581Q9P0T4 197 aa8.67□□□□□ -1.02
COL6A3-205ENST00000392004 LRP4O75096 1905 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms