RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KRASP01116 189 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 CD55P08174 381 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 OR2Z1Q8NG97 314 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 CD300LFQ8TDQ1 290 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 EGLN1Q9GZT9 426 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 PROCRQ9UNN8 238 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 IGKV1D-17A0A075B6S4 117 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 MBD3L4A6NDZ8 208 aaPredicted RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 MBD3L3A6NE82 208 aaPredicted RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 MBD3L5A6NJ08 208 aaPredicted RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF83P51522 516 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 RPL23AP62750 156 aaKnown RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 MBD3L2Q8NHZ7 208 aaPredicted RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 LRRC29Q8WV35 223 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 AGMATQ9BSE5 352 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 UNKLQ9H9P5 680 aaKnown RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 SMCO4Q9NRQ5 59 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 URGCP-MRPS24S4R325 110 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 CADP27708 2225 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 IGHV3OR15-7A0A075B7D8 119 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 OOEPA6NGQ2 149 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 SELLP14151 372 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 IL2RGP31785 369 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 DEFA6Q01524 100 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF718Q3SXZ3 478 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 IGF2-ASQ6U949 168 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 STX12Q86Y82 276 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 GNPNAT1Q96EK6 184 aaPredicted RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 RBKSQ9H477 322 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 RPRMQ9NS64 109 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 KCNIP1Q9NZI2 227 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 A0A1W2PPE2 198 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 ST8SIA5O15466 376 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF737O75373 536 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 IFNA4P05014 189 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 SRP19P09132 144 aaKnown RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 UBE2KP61086 200 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 HNF4GQ14541 408 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 LTC4SQ16873 150 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 SPANXN5Q5MJ07 72 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 CLDND2Q8NHS1 167 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 TOLLIPQ9H0E2 274 aa11.16□□□□□ -0.62
CCDC3-202ENST00000378839 HEATR1Q9H583 2144 aaKnown RBP11.16□□□□□ -0.62
CCDC3-202ENST00000378839 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.15□□□□□ -0.62
CCDC3-202ENST00000378839 RPS16P62249 146 aaKnown RBP11.15□□□□□ -0.62
CCDC3-202ENST00000378839 OR4C12Q96R67 309 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 DUSP13Q9UII6 198 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 MMP24Q9Y5R2 645 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 ZFHX2Q9C0A1 2572 aaPredicted RBP11.15□□□□□ -0.62
CCDC3-202ENST00000378839 FAM201AQ5SY85 155 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 ZDHHC16Q969W1 377 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 PBDC1Q9BVG4 233 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 CLN8Q9UBY8 286 aa11.15□□□□□ -0.62
CCDC3-202ENST00000378839 PUS1Q9Y606 427 aaKnown RBP eCLIP11.15□□□□□ -0.62
CCDC3-202ENST00000378839 ODAMA1E959 279 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 PPIHO43447 177 aaKnown RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 IGHV3-13P01766 116 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 IGHV3-7P01780 117 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 GCH1P30793 250 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 PRDX2P32119 198 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 EDDM3AQ14507 147 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 USF2Q15853 346 aaPredicted RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 SPINK9Q5DT21 86 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 AKR1C8PQ5T2L2 129 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 UNQ6494/PRO21346Q6UXR6 183 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 C1orf229Q6ZS94 237 aaPredicted RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 KIAA1456Q9P272 454 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 KALRNO60229 2985 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 SCAF4O95104 1147 aaKnown RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 CD200P41217 278 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 NHLH1Q02575 133 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 TNFRSF9Q07011 255 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 P2RY6Q15077 328 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 FIP1L1Q6UN15 594 aaKnown RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 CYB561D1Q8N8Q1 229 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 LFNGQ8NES3 379 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 YPEL4Q96NS1 127 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 WASF3Q9UPY6 502 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF891A8MT65 544 aaPredicted RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 IGKV1D-33P01593 117 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 IGKV1-33P01594 117 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 SMIM6P0DI80 62 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 S100PP25815 95 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 PAX6P26367 422 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 FGF8P55075 233 aaPredicted RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 CASP6P55212 293 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 NDUFA6P56556 154 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 LRRC75BQ2VPJ9 315 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 DUX4L9Q6RFH8 374 aaPredicted RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 SSX9Q7RTT3 188 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 ASCL5Q7RTU5 278 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 ZADH2Q8N4Q0 377 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 GCSAMQ8N6F7 178 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 RBMXL3Q8N7X1 1067 aaKnown RBP11.14□□□□□ -0.63
CCDC3-202ENST00000378839 C15orf54Q8N8G6 183 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 OR51M1Q9H341 326 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 HSPB7Q9UBY9 170 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 PSG11Q9UQ72 335 aa11.14□□□□□ -0.63
CCDC3-202ENST00000378839 PMS2P5A8MQ11 134 aa11.13□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF727A8MUV8 499 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms