RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RPL36Q9Y3U8 105 aaKnown RBP10.51□□□□□ -0.73
VPS29-201ENST00000360579 AIREO43918 545 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 LIMS3P0CW19 117 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 LIMS4P0CW20 117 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 GABRB1P18505 474 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 FSTP19883 344 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 CAPGP40121 348 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 FXYD3Q14802 87 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 HMGN3Q15651 99 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 RPEL1Q2QD12 228 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 RPL39P5Q59GN2 51 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 C1orf146Q5VVC0 180 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 GLDNQ6ZMI3 551 aaPredicted RBP10.5□□□□□ -0.73
VPS29-201ENST00000360579 TMPRSS11AQ6ZMR5 421 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 IL1F10Q8WWZ1 152 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 SMIM19Q96E16 107 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 USMG5Q96IX5 58 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 Q96M66 194 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 OR14A2Q96R54 314 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 NEURL2Q9BR09 285 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 BANF2Q9H503 90 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 MRPS18AQ9NVS2 196 aaKnown RBP10.5□□□□□ -0.73
VPS29-201ENST00000360579 AASSQ9UDR5 926 aa10.5□□□□□ -0.73
VPS29-201ENST00000360579 PCLOQ9Y6V0 5065 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 TRBV5-5A0A0J9YX44 114 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 IZUMO1RA6ND01 250 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 EI24O14681 340 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 ITGB1BP1O14713 200 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 CPEP16870 476 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 ALDH3A2P51648 485 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 ZIK1Q3SY52 487 aaPredicted RBP10.49□□□□□ -0.73
VPS29-201ENST00000360579 Q499Y3 187 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 XAF1Q6GPH4 301 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 SIGIRRQ6IA17 410 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 ZNF343Q6P1L6 599 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 OR5T1Q8NG75 326 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 RHOXF1Q8NHV9 184 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 ORAI1Q96D31 301 aa10.49□□□□□ -0.73
VPS29-201ENST00000360579 DNAH10Q8IVF4 4471 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 A0A0B4J203 849 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 OGG1O15527 345 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 BAG2O95816 211 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 LGALS7P47929 136 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 MECP2P51608 486 aaKnown RBP10.48□□□□□ -0.73
VPS29-201ENST00000360579 RPS16P62249 146 aaKnown RBP10.48□□□□□ -0.73
VPS29-201ENST00000360579 YIF1BQ5BJH7 314 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 C5orf24Q7Z6I8 188 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 EDARADDQ8WWZ3 215 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 SNAPC3Q92966 411 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 NEDD4LQ96PU5 975 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 TINAGL1Q9GZM7 467 aaPredicted RBP10.48□□□□□ -0.73
VPS29-201ENST00000360579 GHRLQ9UBU3 117 aa10.48□□□□□ -0.73
VPS29-201ENST00000360579 HECTD4Q9Y4D8 3996 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 TRAV8-7A0A075B6U6 113 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 NUPR2A6NF83 97 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 DCKP27707 260 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 MOB1BQ7L9L4 216 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 PDPNQ86YL7 162 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 DEFB125Q8N687 156 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 BVESQ8NE79 360 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 OR13C5Q8NGS8 318 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 ABHD14BQ96IU4 210 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 SULT4A1Q9BR01 284 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 AGMATQ9BSE5 352 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 ST6GALNAC5Q9BVH7 336 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 SRD5A3Q9H8P0 318 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 FGF20Q9NP95 211 aaPredicted RBP10.47□□□□□ -0.73
VPS29-201ENST00000360579 BABAM2Q9NXR7 383 aa10.47□□□□□ -0.73
VPS29-201ENST00000360579 OR11H12B2RN74 326 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 APOA2P02652 100 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 IGKV1-16P04430 117 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 RASSF2P50749 326 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 CD300EQ496F6 205 aaPredicted RBP10.46□□□□□ -0.73
VPS29-201ENST00000360579 SVOPQ8N4V2 548 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 NKAIN3Q8N8D7 197 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 UQCC2Q9BRT2 126 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 CHMP1AQ9HD42 196 aaPredicted RBP10.46□□□□□ -0.73
VPS29-201ENST00000360579 FAM53CQ9NYF3 392 aa10.46□□□□□ -0.73
VPS29-201ENST00000360579 IRGMA1A4Y4 181 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 CXorf65A6NEN9 183 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 H3BNX3 289 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 TRBV12-3P01733 135 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 CD7P09564 240 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 UBBP0CG47 229 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 ZBTB25P24278 435 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 ETV1P50549 477 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 DYRK1AQ13627 763 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 OR2G6Q5TZ20 316 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 DYNLRB2Q8TF09 96 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 FAM46BQ96A09 425 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 COA4Q9NYJ1 87 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 ADAM30Q9UKF2 790 aa10.45□□□□□ -0.74
VPS29-201ENST00000360579 TRBV5-7A0A0A0MS05 114 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 ZNF785A8K8V0 405 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 NAPSAO96009 420 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 MYL12AP19105 171 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 CEACAM6P40199 344 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 RPS11P62280 158 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS29-201ENST00000360579 ZNF880Q6PDB4 577 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 SLC16A13Q7RTY0 426 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms