RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TPRP12270 2363 aaKnown RBP8.65□□□□□ -1.02
LIMA1-201ENST00000341247 RBFOX3A6NFN3 312 aa8.65□□□□□ -1.02
LIMA1-201ENST00000341247 BAXQ07812 192 aa8.65□□□□□ -1.02
LIMA1-201ENST00000341247 UTF1Q5T230 341 aa8.65□□□□□ -1.02
LIMA1-201ENST00000341247 ZNF645Q8N7E2 425 aa8.65□□□□□ -1.02
LIMA1-201ENST00000341247 GNG13Q9P2W3 67 aa8.65□□□□□ -1.02
LIMA1-201ENST00000341247 hCG_1809904A0A1W2PP81 198 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 A0A1W2PR64 198 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 A0A1W2PRV1 198 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 LINC00473A8K010 186 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 NPIPB11E5RHQ5 1161 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 UBE2KP61086 200 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 SMCO4Q9NRQ5 59 aa8.65□□□□□ -1.03
LIMA1-201ENST00000341247 TAS2R30P59541 319 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 DUX4L9Q6RFH8 374 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-201ENST00000341247 VKORC1L1Q8N0U8 176 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 FAM24BQ8N5W8 94 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 GNPNAT1Q96EK6 184 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-201ENST00000341247 RBKSQ9H477 322 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 RPRMQ9NS64 109 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 COLCA2A8K830 154 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF727A8MUV8 499 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 ZG16O60844 167 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 IGLV1-44P01699 117 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 CRYAAP02489 173 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 BRWD1-AS2P59051 145 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 OR2B8PP59922 312 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 AVPI1Q5T686 147 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 SLC35E4Q6ICL7 350 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 CYB561D1Q8N8Q1 229 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 C1orf162Q8NEQ5 155 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-201ENST00000341247 ITLN1Q8WWA0 313 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 LSM10Q969L4 123 aaKnown RBP8.64□□□□□ -1.03
LIMA1-201ENST00000341247 OR4C12Q96R67 309 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 IGKV1D-17A0A075B6S4 117 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 ODAMA1E959 279 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 DEFA4P12838 97 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 KITLGP21583 273 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 FLI1Q01543 452 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-201ENST00000341247 P2RY6Q15077 328 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 TGIF2LYQ8IUE0 185 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 MUCL1Q96DR8 90 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF665Q9H7R5 613 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 WSB1Q9Y6I7 421 aa8.64□□□□□ -1.03
LIMA1-201ENST00000341247 DFFBO76075 338 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 SSX7Q7RTT5 188 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 IQCF2Q8IXL9 164 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 ZCCHC24Q8N2G6 241 aaKnown RBP8.63□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF525Q8N782 197 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 URGCP-MRPS24S4R325 110 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 HOXB1P14653 301 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-201ENST00000341247 LMO1P25800 156 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 RPL39P5Q59GN2 51 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 COMMD1Q8N668 190 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 RBMXL3Q8N7X1 1067 aaKnown RBP8.63□□□□□ -1.03
LIMA1-201ENST00000341247 SNIP1Q8TAD8 396 aaKnown RBP8.63□□□□□ -1.03
LIMA1-201ENST00000341247 PRELID3BQ9Y3B1 194 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 RNF212BA8MTL3 300 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 CEBPZOSA8MTT3 80 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 SPINT2O43291 252 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 FCGR3BO75015 233 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 MMP9P14780 707 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 TNFRSF9Q07011 255 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 SLC38A11Q08AI6 406 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 CATR1Q13166 79 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 NCR3LG1Q68D85 454 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 H2BFWTQ7Z2G1 175 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 GCSAMQ8N6F7 178 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 MMP24Q9Y5R2 645 aa8.63□□□□□ -1.03
LIMA1-201ENST00000341247 YLPM1P49750 1951 aaKnown RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 MBD3L4A6NDZ8 208 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 MBD3L3A6NE82 208 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 MBD3L5A6NJ08 208 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 TLE4Q04727 773 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 ADAM5Q6NVV9 412 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 LFNGQ8NES3 379 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 MBD3L2Q8NHZ7 208 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 HIST1H2BAQ96A08 127 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 DCAF16Q9NXF7 216 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 TLN1Q9Y490 2541 aaKnown RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 IGF2RP11717 2491 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 GPR12P47775 334 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 RAB13P51153 203 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 KLF3P57682 345 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 MBNL2Q5VZF2 373 aaKnown RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 M0R1X1 148 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 CEACAM4O75871 244 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 CYB5R3P00387 301 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 RAB11AP62491 216 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 HBG1P69891 147 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 HBG2P69892 147 aa8.62□□□□□ -1.03
LIMA1-201ENST00000341247 CISD2Q8N5K1 135 aaKnown RBP8.62□□□□□ -1.03
LIMA1-201ENST00000341247 SPTBN4Q9H254 2564 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 SCAF4O95104 1147 aaKnown RBP8.61□□□□□ -1.03
LIMA1-201ENST00000341247 ERVFRD-1P60508 538 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 ICAM4Q14773 271 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 C1orf185Q5T7R7 199 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 ARFGEF3Q5TH69 2177 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF787Q6DD87 383 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 H3BQ15 152 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms