RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PROP1O75360 226 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 IGKV1-39P01597 117 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 IGKV1D-39P04432 117 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 PET100P0DJ07 73 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 RPL30P62888 115 aaKnown RBP12.73□□□□□ -0.37
LIMS1-202ENST00000338045 ZNF345Q14585 488 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 CT45A1Q5HYN5 189 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 TCTEX1D1Q8N7M0 179 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 CT45A3Q8NHU0 189 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 H1FXQ92522 213 aaKnown RBP12.73□□□□□ -0.37
LIMS1-202ENST00000338045 RAB1CQ92928 201 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 TIMD4Q96H15 378 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 HSD17B10Q99714 261 aaKnown RBP12.73□□□□□ -0.37
LIMS1-202ENST00000338045 ABHD14AQ9BUJ0 271 aa12.73□□□□□ -0.37
LIMS1-202ENST00000338045 GPR37O15354 613 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 SLC31A2O15432 143 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 S100A11P31949 105 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 CDKN1AP38936 164 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 DLX6P56179 175 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 TMEM33P57088 247 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 SRSF1Q07955 248 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIMS1-202ENST00000338045 CATR1Q13166 79 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OPCMLQ14982 345 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 FAM209BQ5JX69 171 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 AVPI1Q5T686 147 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 PRAMEF5Q5TYX0 476 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OR4D5Q8NGN0 318 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 IGFBPL1Q8WX77 278 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 SPIN2AQ99865 258 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 SPIN2BQ9BPZ2 258 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 COL12A1Q99715 3063 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 FLNCQ14315 2725 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OVOL3O00110 214 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OR2F2O95006 317 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 CLDN1O95832 211 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 F12P00748 615 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-202ENST00000338045 CCL3L1P16619 93 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 GPR12P47775 334 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 BRWD1-AS2P59051 145 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 TLE4Q04727 773 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OR2F1Q13607 317 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 ACOT7LQ6ZUV0 252 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 TMUB2Q71RG4 321 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 STX12Q86Y82 276 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 OR5AC2Q9NZP5 309 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 MIOXQ9UGB7 285 aa12.72□□□□□ -0.37
LIMS1-202ENST00000338045 RALYQ9UKM9 306 aaKnown RBP12.72□□□□□ -0.37
LIMS1-202ENST00000338045 DCHS2Q6V1P9 2916 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 A0A0D9SG52 128 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 PPIHO43447 177 aaKnown RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 GATCO43716 136 aaKnown RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 TSC22D2O75157 780 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 MBPP02686 304 aaPredicted RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 SLC25A6P12236 298 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 ZNF16P17020 682 aaPredicted RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 NFYBP25208 207 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 BTNL3Q6UXE8 466 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 KCNRGQ8N5I3 272 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 LEAP2Q969E1 77 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 LSM10Q969L4 123 aaKnown RBP12.71□□□□□ -0.37
LIMS1-202ENST00000338045 ARL6Q9H0F7 186 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 ZFP57Q9NU63 452 aa12.71□□□□□ -0.37
LIMS1-202ENST00000338045 USF3Q68DE3 2245 aa12.71□□□□□ -0.38
LIMS1-202ENST00000338045 LINC00473A8K010 186 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 DEDDO75618 318 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 IGHV3-7P01780 117 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 DUTP33316 252 aaKnown RBP12.7□□□□□ -0.38
LIMS1-202ENST00000338045 EFNA4P52798 201 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 SLC25A48Q6ZT89 311 aaKnown RBP12.7□□□□□ -0.38
LIMS1-202ENST00000338045 FAM219AQ8IW50 185 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 ODF3L1Q8IXM7 274 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 ZNF680Q8NEM1 530 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 OR1S1Q8NH92 325 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 DCUN1D4Q92564 292 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 NEIL1Q96FI4 390 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-202ENST00000338045 A0A0G2JRQ6 117 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 K7EPK0 472 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 NDUFS7O75251 213 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 S100A10P60903 97 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 FAM71E2Q8N5Q1 922 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 OR8B3Q8NGG8 313 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 C8orf46Q8TAG6 207 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 TCTEX1D2Q8WW35 142 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 RRNAD1Q96FB5 475 aaKnown RBP12.7□□□□□ -0.38
LIMS1-202ENST00000338045 OR8B2Q96RD0 313 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 ZNF251Q9BRH9 671 aa12.7□□□□□ -0.38
LIMS1-202ENST00000338045 A0A1B0GU03 582 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 C17orf98A8MV24 154 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 RAB29O14966 203 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 RAMP3O60896 148 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 PITX3O75364 302 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 SNAPINO95295 136 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 IGKV1-5P01602 117 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 LPAR6P43657 344 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 ERVFRD-1P60508 538 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 WDR25Q64LD2 544 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-202ENST00000338045 SPAG16Q8N0X2 631 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 C11orf42Q8N5U0 333 aa12.69□□□□□ -0.38
LIMS1-202ENST00000338045 INO80EQ8NBZ0 244 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms