RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IGHV2-70DA0A0C4DH43 119 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 J3QR06 171 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 TNFSF12O43508 249 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 IGLV1-47P01700 117 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 SAA2P0DJI9 122 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 PRTN3P24158 256 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 ZFP36P26651 326 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 GZMKP49863 264 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 ERVFRD-1P60508 538 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 RPL30P62888 115 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 CYCSP99999 105 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 IL15RAQ13261 267 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 ZFP69Q49AA0 526 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 ZNF585BQ52M93 769 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 GSG1LQ6UXU4 331 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 SELENOHQ8IZQ5 122 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 Q8N7P7 452 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 BEND2Q8NDZ0 799 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 OR51H1Q8NH63 302 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 CD300LFQ8TDQ1 290 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 DDB2Q92466 427 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 RBPMSQ93062 196 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 LEAP2Q969E1 77 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 C1orf159Q96HA4 380 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 NMES1Q9C002 83 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 NARFLQ9H6Q4 476 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 METTL8Q9H825 291 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 PRR13Q9NZ81 148 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 DOPEY2Q9Y3R5 2298 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 IGHV4-61A0A0C4DH41 118 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 ADAP1O75689 374 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 SIX6O95475 246 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 IFNA21P01568 189 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 SERPINE2P07093 398 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 VDAC1P21796 283 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 DNASE1P24855 282 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 KIR2DS2P43631 304 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 DEFB113Q30KQ7 82 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 NMSQ5H8A3 153 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 TMEM268Q5VZI3 342 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 GGNBP1Q5YKI7 109 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 CRYBG3Q68DQ2 2970 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 OR2T35Q8NGX2 323 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 ST6GALNAC6Q969X2 333 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 C2orf50Q96LR7 162 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 GPHA2Q96T91 129 aa12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 RANBP3Q9H6Z4 567 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 GCN1Q92616 2671 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-202ENST00000334448 ABCA12Q86UK0 2595 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 CELSR2Q9HCU4 2923 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 A0A096LNT2 108 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 IGHV2-26A0A0B4J1V2 119 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 LINC00473A8K010 186 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 M0R1X1 148 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 CCSO14618 274 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 SLC25A6P12236 298 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 THBS3P49746 956 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 BRWD1-AS2P59051 145 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 TAGLNQ01995 201 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 PRSS57Q6UWY2 283 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 LYZL2Q7Z4W2 148 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 NOXA1Q86UR1 476 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 ZNF695Q8IW36 515 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 ABHD12Q8N2K0 398 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 SLC35G3Q8N808 338 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 OR11H6Q8NGC7 330 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 LSM10Q969L4 123 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 TMEM186Q96B77 213 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 S1PR3Q99500 378 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 CLEC7AQ9BXN2 247 aa12.17□□□□□ -0.46
CCDC88C-202ENST00000334448 ARID1AO14497 2285 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 IGKV1-39P01597 117 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 IGKV1D-39P04432 117 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 HOXB5P09067 269 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 IL3RAP26951 378 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 GNG10P50151 68 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 FGL1Q08830 312 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 CLEC12BQ2HXU8 276 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 HLA-DRB5Q30154 266 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 RPL39P5Q59GN2 51 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 C1orf229Q6ZS94 237 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 LYG1Q8N1E2 194 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 OR13D1Q8NGV5 346 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 TCTEX1D2Q8WW35 142 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 HYLS1Q96M11 299 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 SPIN2AQ99865 258 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 SPIN2BQ9BPZ2 258 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 CHIAQ9BZP6 476 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 SIRPDQ9H106 197 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 COMMD9Q9P000 198 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 ONECUT1Q9UBC0 465 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 PRELID3BQ9Y3B1 194 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 UNC79Q9P2D8 2635 aa12.16□□□□□ -0.46
CCDC88C-202ENST00000334448 APCP25054 2843 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 A0A1W2PPE3 182 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 ODF3BA8MYP8 253 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 SNAPC5O75971 98 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 ATG12O94817 140 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 IGHV3-7P01780 117 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 P0C879 139 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms