RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 A0A0G2JLM5 398 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 CTXND1A0A1B0GTU2 59 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 KLRC4-KLRK1H3BQV0 150 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 CDC42EP2O14613 210 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 CRYBA4P53673 196 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 IGSF21Q96ID5 467 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM94Q12767 1356 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 PARP4Q9UKK3 1724 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 IGHV4-28A0A0C4DH34 117 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 APOBEC4Q8WW27 367 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 NPCDR1Q9BY65 106 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 NPDC1Q9NQX5 325 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1W2PRU2 124 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 A6NED7 52 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 IFITM5A6NNB3 132 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 MKRN2OSH3BPM6 223 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 NME4O00746 187 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 RPS24P62847 133 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 NKAIN2Q5VXU1 208 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 ATOH1Q92858 354 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNF689Q96CS4 500 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 RNF125Q96EQ8 232 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 APOOQ9BUR5 198 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 AJAP1Q9UKB5 411 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 OARD1Q9Y530 152 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 FOXE1O00358 373 aaPredicted RBP6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 SDHDO14521 159 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 CD1DP15813 335 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 TEPPQ6URK8 271 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 NKAPP1Q8N9T2 125 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 FSCN3Q9NQT6 498 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 ARHGAP23Q9P227 1491 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 C17orf51A8MQB3 221 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 ASAH2BP0C7U1 165 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 RNASE2P10153 161 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 UNGP13051 313 aaPredicted RBP6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 CBLN1P23435 193 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 KIR2DS2P43631 304 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 ANKRD34AQ69YU3 496 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM252Q8N6L7 170 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 CDRT4Q8N9R6 151 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 NABP1Q96AH0 204 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 ZIC5Q96T25 663 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 TUBA4BQ9H853 241 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 LRP12Q9Y561 859 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 RIMS1Q86UR5 1692 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 FGF5P12034 268 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 TCEAL1Q15170 157 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 C17orf99Q6UX52 265 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 CYB561D1Q8N8Q1 229 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 OR13A1Q8NGR1 328 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 ECM29Q5VYK3 1845 aa6.65□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1W2PQU0 124 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 ADM5C9JUS6 153 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 PSCAO43653 123 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 NANOS2P60321 138 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 NUTF2P61970 127 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 ID3Q02535 119 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 MMDQ15546 238 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 CXCL17Q6UXB2 119 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 ZC3H3Q8IXZ2 948 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 OSR2Q8N2R0 312 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 WDR83Q9BRX9 315 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 MYH6P13533 1939 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 SPEF2Q9C093 1822 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM202A6NGA9 273 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 PEX10O60683 326 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 PEBP1P30086 187 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 TXNRD3NBQ6F5E7 133 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC23A3Q6PIS1 610 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 AMN1Q8IY45 258 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 EMC6Q9BV81 110 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC25A19Q9HC21 320 aa6.65□□□□□ -1.35
LIMCH1-201ENST00000313860 TAX1BP3O14907 124 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SMIM10L2AP0DMW4 78 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SMIM10L2BP0DMW5 78 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SELLP14151 372 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 MRPL2Q5T653 305 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM219Q86XT9 240 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 CLDND1Q9NY35 253 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 MMP23AO75900 390 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 TM4SF4P48230 202 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 EMDP50402 254 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 PSG3Q16557 428 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 LILRA3Q8N6C8 439 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 DEFB127Q9H1M4 99 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 KDM3BQ7LBC6 1761 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 ZNF30P17039 623 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 CCL1P22362 96 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 IFI27P40305 119 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 DAPP51397 102 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 ZAR1Q86SH2 424 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC25A38Q96DW6 304 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 AKIP1Q9NQ31 210 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 TMED7Q9Y3B3 224 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 FMN2Q9NZ56 1722 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 B9A039 149 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 CLDN2P57739 230 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM255BQ8WV15 326 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms