RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CACNA1BQ00975 2339 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPIAL4EA0A075B759 164 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPIAL4DF5H284 164 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 WNT2P09544 360 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPIAL4FP0DN26 164 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPOXP50336 477 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 HTD2P86397 168 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPP1R1CQ8WVI7 109 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 ARL11Q969Q4 196 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 C14orf79Q96F83 325 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 AKR1E2Q96JD6 320 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 TP53RKQ96S44 253 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PARP12Q9H0J9 701 aaKnown RBP12.92□□□□□ -0.34
LSM6-201ENST00000296581 METTL8Q9H825 291 aaKnown RBP12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPIAL4AQ9Y536 164 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 SPTBN1Q01082 2364 aaKnown RBP12.91□□□□□ -0.34
LSM6-201ENST00000296581 TCAPO15273 167 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 PHF1O43189 567 aaPredicted RBP12.91□□□□□ -0.34
LSM6-201ENST00000296581 SPINT2O43291 252 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 PGLYRP1O75594 196 aaPredicted RBP12.91□□□□□ -0.34
LSM6-201ENST00000296581 IGLV2-14P01704 120 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 HOXB5P09067 269 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 FAM216BQ8N7L0 139 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 OR52L2PQ8NGH6 319 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 CCL17Q92583 94 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 C18orf12Q96KH6 178 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 OR10C1Q96KK4 312 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 C2orf50Q96LR7 162 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 OR6C3Q9NZP0 311 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 COMMD9Q9P000 198 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 IGHV1-69-2A0A0G2JMI3 117 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 NKX6-3A6NJ46 265 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 TNFRSF13BO14836 293 aaPredicted RBP12.91□□□□□ -0.34
LSM6-201ENST00000296581 CGB3P0DN86 165 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 CGB7P0DN87 165 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 SLC25A4P12235 298 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 SRPXP78539 464 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 IL15RAQ13261 267 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 LGI3Q8N145 548 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 TMEM222Q9H0R3 208 aa12.91□□□□□ -0.34
LSM6-201ENST00000296581 NQO2P16083 231 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 EDDM3BP56851 147 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 GNMTQ14749 295 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 C15orf54Q8N8G6 183 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 ZNF383Q8NA42 475 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 ABCA4P78363 2273 aa12.9□□□□□ -0.34
LSM6-201ENST00000296581 OR8U9P0C7N5 309 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 IGFBP2P18065 325 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 S100GP29377 79 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 GGNBP1Q5YKI7 109 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 C11orf87Q6NUJ2 197 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 OR8U1Q8NH10 309 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 NINJ1Q92982 152 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 HIST1H2BAQ96A08 127 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 TMEM56Q96MV1 263 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 C2orf88Q9BSF0 95 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 SEC11CQ9BY50 192 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 OR2S2Q9NQN1 319 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 CBLN4Q9NTU7 201 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 TMEM56-RWDD3S4R434 201 aa12.9□□□□□ -0.35
LSM6-201ENST00000296581 F2RL2O00254 374 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 IFNA21P01568 189 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 UCP1P25874 307 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 PSMB6P28072 239 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 AKIRIN2Q53H80 203 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 C11orf71Q6IPW1 123 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 RFESDQ8TAC1 157 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 CFAP46Q8IYW2 2715 aa12.89□□□□□ -0.35
LSM6-201ENST00000296581 H0Y980 276 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 C19orf84I3L1E1 186 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 F2RP25116 425 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 PPP1CCP36873 323 aaKnown RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 BPIFB3P59826 476 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 SRSF3P84103 164 aaKnown RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 MSMO1Q15800 293 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 PYY3Q5JQD4 70 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 FAM53AQ6NSI3 398 aaPredicted RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 BBC3Q96PG8 261 aaPredicted RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 GPHA2Q96T91 129 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 SMCO4Q9NRQ5 59 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 JPT1Q9UK76 154 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 UBE2J1Q9Y385 318 aaPredicted RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 RBM7Q9Y580 266 aaKnown RBP12.88□□□□□ -0.35
LSM6-201ENST00000296581 TMPRSS2O15393 492 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 LRRC37A5PQ49AS3 106 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 TCF23Q7RTU1 214 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 LYZL2Q7Z4W2 148 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 ZBTB34Q8NCN2 500 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 CORO2AQ92828 525 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 PHYHIPLQ96FC7 376 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 PRDM13Q9H4Q3 707 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 GFOD1Q9NXC2 390 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 CALYQ9NYX4 217 aa12.88□□□□□ -0.35
LSM6-201ENST00000296581 BTBD17A6NE02 478 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 AP4M1O00189 453 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 TNFSF12O43508 249 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 FSTL3O95633 263 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 CDS2O95674 445 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 C17orf58Q2M2W7 97 aa12.87□□□□□ -0.35
LSM6-201ENST00000296581 IAH1Q2TAA2 248 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms