RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 UFD1Q92890 307 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 MS4A10Q96PG2 267 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 RCHY1Q96PM5 261 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 URM1Q9BTM9 101 aaKnown RBP9.87□□□□□ -0.83
CD44-203ENST00000278386 RIMS4Q9H426 269 aaPredicted RBP9.87□□□□□ -0.83
CD44-203ENST00000278386 AK3Q9UIJ7 227 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 GAB2Q9UQC2 676 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 PTGES3LE9PB15 166 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 SLC22A1O15245 554 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 SOCS1O15524 211 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 APOA2P02652 100 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 GP9P14770 177 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 ZBTB25P24278 435 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 CD40LGP29965 261 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 CEACAM6P40199 344 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 SPHARQ15513 63 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 SRSF7Q16629 238 aaKnown RBP eCLIP9.86□□□□□ -0.83
CD44-203ENST00000278386 LIPKQ5VXJ0 399 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 DRAXINQ8NBI3 349 aaPredicted RBP9.86□□□□□ -0.83
CD44-203ENST00000278386 LFNGQ8NES3 379 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 GRPEL2Q8TAA5 225 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 LPAR5Q9H1C0 372 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 C12orf4Q9NQ89 552 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 ZNF221Q9UK13 617 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 MGAT4AQ9UM21 535 aa9.86□□□□□ -0.83
CD44-203ENST00000278386 TRBV6-6A0A0A6YYG2 114 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 FCN1O00602 326 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 ITGB1BP1O14713 200 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 SPDEFO95238 335 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 UCHL1P09936 223 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 HSMCR30P0CW71 290 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 ARSBP15848 533 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 RPS16P62249 146 aaKnown RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 QRFPP83859 136 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 PSG5Q15238 335 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 ACSM6Q6P461 480 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 CD200R1LQ6Q8B3 271 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 HAPLN4Q86UW8 402 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 SBSPONQ8IVN8 264 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 OR5AN1Q8NGI8 311 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 TMEM203Q969S6 136 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 FLYWCH2Q96CP2 140 aaKnown RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 OR4C12Q96R67 309 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 TSNAXQ99598 290 aaKnown RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 RSRP1Q9BUV0 290 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 C11orf54Q9H0W9 315 aaPredicted RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 ZNF355PQ9NSJ1 428 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 SCN3BQ9NY72 215 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 NKX1-2Q9UD57 310 aaPredicted RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 LSM2Q9Y333 95 aaKnown RBP9.85□□□□□ -0.83
CD44-203ENST00000278386 NUBP2Q9Y5Y2 271 aa9.85□□□□□ -0.83
CD44-203ENST00000278386 STAB2Q8WWQ8 2551 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 TRIM64CA6NLI5 447 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 SLC17A2O00624 439 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 CASQ2O14958 399 aaPredicted RBP9.84□□□□□ -0.83
CD44-203ENST00000278386 SLC25A17O43808 307 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 TRGV3P03979 118 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 IGKV1-16P04430 117 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 TFAP2AP05549 437 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 SCTP09683 121 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 FRMD6-AS1P0C7T7 363 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 EGR2P11161 476 aaPredicted RBP9.84□□□□□ -0.83
CD44-203ENST00000278386 VEGFCP49767 419 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 MRPS15P82914 257 aaKnown RBP9.84□□□□□ -0.83
CD44-203ENST00000278386 RAB11BQ15907 218 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 AKIRIN2Q53H80 203 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 RNLSQ5VYX0 342 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 PDPNQ86YL7 162 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 MUC7Q8TAX7 377 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 ARHGAP5-AS1Q96IT6 56 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 RNF5Q99942 180 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 CMSS1Q9BQ75 279 aaKnown RBP9.84□□□□□ -0.83
CD44-203ENST00000278386 AGMATQ9BSE5 352 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 SLA2Q9H6Q3 261 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 ZMAT4Q9H898 229 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 Q9N2K0 584 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 TPSG1Q9NRR2 321 aa9.84□□□□□ -0.83
CD44-203ENST00000278386 AK6Q9Y3D8 172 aaKnown RBP9.84□□□□□ -0.83
CD44-203ENST00000278386 M0R1X1 148 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 HSPB1P04792 205 aaKnown RBP9.83□□□□□ -0.84
CD44-203ENST00000278386 SNRPBP14678 240 aaKnown RBP9.83□□□□□ -0.84
CD44-203ENST00000278386 CLDN12P56749 244 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 RPS25P62851 125 aaKnown RBP9.83□□□□□ -0.84
CD44-203ENST00000278386 ZNF562Q6V9R5 426 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 OR56B1Q8NGI3 324 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 ELOVL1Q9BW60 279 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 PECRQ9BY49 303 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 SLC35D1Q9NTN3 355 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 RDH8Q9NYR8 311 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 HSF4Q9ULV5 492 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 STUB1Q9UNE7 303 aa9.83□□□□□ -0.84
CD44-203ENST00000278386 RYR2Q92736 4967 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 DYNC2H1Q8NCM8 4307 aaKnown RBP9.82□□□□□ -0.84
CD44-203ENST00000278386 C13orf42A0A1B0GVH6 325 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 ARL6IP5O75915 188 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 CNIH1O95406 144 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 CALRP27797 417 aaKnown RBP9.82□□□□□ -0.84
CD44-203ENST00000278386 LINC00205P59089 165 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 CBX3Q13185 183 aa9.82□□□□□ -0.84
CD44-203ENST00000278386 FXYD3Q14802 87 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms