RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FAM90A27PA6NNH2 459 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 COLCA2A8K830 154 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 FOLR2P14207 255 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 APOBEC3AP31941 199 aaPredicted RBP12.74□□□□□ -0.37
SF3B4-201ENST00000271628 CAMLGP49069 296 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 EDDM3BP56851 147 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 LSM10Q969L4 123 aaKnown RBP12.74□□□□□ -0.37
SF3B4-201ENST00000271628 C14orf79Q96F83 325 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 BSCL2Q96G97 398 aaPredicted RBP12.74□□□□□ -0.37
SF3B4-201ENST00000271628 OR2D2Q9H210 308 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 SAP30LQ9HAJ7 183 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 JPT1Q9UK76 154 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 A0A1B0GU03 582 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 E7EQL1 145 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF616Q08AN1 781 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 GUK1Q16774 197 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 CLEC9AQ6UXN8 241 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 TCTEX1D1Q8N7M0 179 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 RFESDQ8TAC1 157 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 RCL1Q9Y2P8 373 aaKnown RBP12.74□□□□□ -0.37
SF3B4-201ENST00000271628 DYSFO75923 2080 aa12.74□□□□□ -0.37
SF3B4-201ENST00000271628 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 PPP1CCP36873 323 aaKnown RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 PPT1P50897 306 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 NHLH2Q02577 135 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 CATR1Q13166 79 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF266Q14584 549 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 FAM201AQ5SY85 155 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF788Q6ZQV5 615 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 DMRTC2Q8IXT2 367 aaPredicted RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 OR2C3Q8N628 320 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 LFNGQ8NES3 379 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 CA5BP1Q8WTZ4 195 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 PBDC1Q9BVG4 233 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 SCRT1Q9BWW7 348 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 TUBA4BQ9H853 241 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 C19orf12Q9NSK7 152 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ICE1Q9Y2F5 2266 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 KALRNO60229 2985 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 CACNA1DQ01668 2161 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 TRAV38-1A0A0B4J264 116 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 YPEL1O60688 119 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 PRH1P02810 166 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF16P17020 682 aaPredicted RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ADORA2A-AS1P86434 159 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ID3Q02535 119 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 RNASE11Q8TAA1 199 aaKnown RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 YPEL2Q96QA6 119 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 EIF5A2Q9GZV4 153 aaKnown RBP12.73□□□□□ -0.37
SF3B4-201ENST00000271628 SMDT1Q9H4I9 107 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 C11orf1Q9H5F2 150 aa12.73□□□□□ -0.37
SF3B4-201ENST00000271628 ARID1AO14497 2285 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 B9A039 149 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 F2RL2O00254 374 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 MMP9P14780 707 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 EWSR1Q01844 656 aaKnown RBP eCLIP12.72□□□□□ -0.37
SF3B4-201ENST00000271628 EFNB3Q15768 340 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 RNF212Q495C1 297 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF66Q6ZN08 573 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 DEFB108BQ8NET1 73 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 LINC01560Q8TB33 94 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 GAFA1Q96PS6 74 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 DCTN5Q9BTE1 182 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 DYNLRB1Q9NP97 96 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 KCNJ16Q9NPI9 418 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 RNF150Q9ULK6 438 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 SPTA1P02549 2419 aa12.72□□□□□ -0.37
SF3B4-201ENST00000271628 A0A1B0GW64 132 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 IFNA4P05014 189 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 LY6DQ14210 128 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 MORN2Q502X0 79 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF585BQ52M93 769 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 AGMATQ9BSE5 352 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 SLC25A31Q9H0C2 315 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 GNG12Q9UBI6 72 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 DSCAMO60469 2012 aa12.71□□□□□ -0.37
SF3B4-201ENST00000271628 TRGV10A0A0A0MS01 117 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 IGHV3-43A0A0B4J1X8 118 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM8BA6NDV4 472 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 ZNF98A6NK75 572 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 UMAD1C9J7I0 102 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 GYPAP02724 150 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 CGB3P0DN86 165 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 CGB7P0DN87 165 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 IGHV3-43DP0DP04 118 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 AKR1D1P51857 326 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 RAB5BP61020 215 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 EIF4EBP1Q13541 118 aaPredicted RBP12.71□□□□□ -0.38
SF3B4-201ENST00000271628 ZCCHC24Q8N2G6 241 aaKnown RBP12.71□□□□□ -0.38
SF3B4-201ENST00000271628 HSD17B11Q8NBQ5 300 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 GPR146Q96CH1 333 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 CCL13Q99616 98 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 HSD17B10Q99714 261 aaKnown RBP12.71□□□□□ -0.38
SF3B4-201ENST00000271628 CALYQ9NYX4 217 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 RNF115Q9Y4L5 304 aa12.71□□□□□ -0.38
SF3B4-201ENST00000271628 NBEAQ8NFP9 2946 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 NKX6-3A6NJ46 265 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 WRBO00258 174 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 PITX3O75364 302 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 IGKV1-39P01597 117 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms