RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 NCMAPQ5T1S8 102 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF826PQ6ZT77 177 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 C11orf53Q8IXP5 236 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 DEFB124Q8NES8 71 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 OR52L2PQ8NGH6 319 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 CXXC4Q9H2H0 198 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 TGIF2-C20orf24A0A0A6YYL0 155 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 LRRC30A6NM36 301 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 WNT9BO14905 357 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 CYB5BO43169 146 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 IGKV3-15P01624 115 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 FABP1P07148 127 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 HOXA5P20719 270 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 GABRA2P47869 451 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 RPL30P62888 115 aaKnown RBP13.78□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF816Q0VGE8 651 aaPredicted RBP13.78□□□□□ -0.2
HOXD3-201ENST00000249440 PMS2P11Q13670 270 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 ATP6V1FQ16864 119 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 FAM180AQ6UWF9 173 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 CNEP1R1Q8N9A8 125 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 ZNF610Q8N9Z0 462 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 SLC39A9Q9NUM3 307 aa13.78□□□□□ -0.2
HOXD3-201ENST00000249440 PRRC2CQ9Y520 2896 aaKnown RBP13.77□□□□□ -0.2
HOXD3-201ENST00000249440 SPAARA0A1B0GVQ0 90 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 IGHG3P01860 377 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 P0C879 139 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 NUBP1P53384 320 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 EIF4EBP1Q13541 118 aaPredicted RBP13.77□□□□□ -0.21
HOXD3-201ENST00000249440 OR2B11Q5JQS5 317 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 ACP7Q6ZNF0 438 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 CENPVQ7Z7K6 275 aaPredicted RBP13.77□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF808Q8N4W9 903 aaPredicted RBP13.77□□□□□ -0.21
HOXD3-201ENST00000249440 TCTEX1D1Q8N7M0 179 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 PRR7Q8TB68 274 aa13.77□□□□□ -0.21
HOXD3-201ENST00000249440 ODAMA1E959 279 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 CEBPZOSA8MTT3 80 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 CLDN34H7C241 214 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF737O75373 536 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 CYB5R3P00387 301 aaPredicted RBP13.76□□□□□ -0.21
HOXD3-201ENST00000249440 OR13D1Q8NGV5 346 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 LHX4Q969G2 390 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 SDF2L1Q9HCN8 221 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 GSN-AS1Q9NRJ2 163 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 LAMP3Q9UQV4 416 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 DOCK11Q5JSL3 2073 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 DMXL2Q8TDJ6 3036 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 TUBG1P23258 451 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 CDX1P47902 265 aaPredicted RBP13.76□□□□□ -0.21
HOXD3-201ENST00000249440 GUSBP1Q15486 140 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 RPP25LQ8N5L8 163 aaKnown RBP13.76□□□□□ -0.21
HOXD3-201ENST00000249440 MRGPRDQ8TDS7 321 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 COQ2Q96H96 371 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 TUBG2Q9NRH3 451 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 DOK5Q9P104 306 aa13.76□□□□□ -0.21
HOXD3-201ENST00000249440 DLL1O00548 723 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 AGFG2O95081 481 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 S1PR2O95136 353 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 NDUFA6P56556 154 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 WDR82Q6UXN9 313 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 C1orf87Q8N0U7 546 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 OR10P1Q8NGE3 313 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 C5orf30Q96GV9 206 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 CIB3Q96Q77 187 aaPredicted RBP13.75□□□□□ -0.21
HOXD3-201ENST00000249440 OR51M1Q9H341 326 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF891A8MT65 544 aaPredicted RBP13.75□□□□□ -0.21
HOXD3-201ENST00000249440 IFNL4K9M1U5 179 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 TIMM8AO60220 97 aaPredicted RBP13.75□□□□□ -0.21
HOXD3-201ENST00000249440 CLDN14O95500 239 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 MBP02144 154 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 RND2P52198 227 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 C1orf162Q8NEQ5 155 aaPredicted RBP13.75□□□□□ -0.21
HOXD3-201ENST00000249440 LURAP1Q96LR2 239 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 TMEM147Q9BVK8 224 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 CLN8Q9UBY8 286 aa13.75□□□□□ -0.21
HOXD3-201ENST00000249440 SPENQ96T58 3664 aaKnown RBP13.75□□□□□ -0.21
HOXD3-201ENST00000249440 C17orf98A8MV24 154 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 RAB29O14966 203 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 YIF1AO95070 293 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 COX5AP20674 150 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 S100PP25815 95 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 PRAMEF6Q5VXH4 476 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 Q6ZR03 302 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 H2BFWTQ7Z2G1 175 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 DTD1Q8TEA8 209 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 FAM210BQ96KR6 192 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 SPTBN4Q9H254 2564 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 IGKV1D-33P01593 117 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 IGKV1-33P01594 117 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 CD55P08174 381 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 KITLGP21583 273 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 BRWD1-AS2P59051 145 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 MEF2BQ02080 365 aaPredicted RBP13.74□□□□□ -0.21
HOXD3-201ENST00000249440 SMIM21Q3B7S5 101 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 FAM53AQ6NSI3 398 aaPredicted RBP13.74□□□□□ -0.21
HOXD3-201ENST00000249440 BTNL3Q6UXE8 466 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF66Q6ZN08 573 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 BEND4Q6ZU67 534 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 WDR31Q8NA23 367 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 TAAR6Q96RI8 345 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 MRPL37Q9BZE1 423 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms