RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SCAND1P57086 179 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 C20orf204Q6ZNR8 217 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 LINC00469Q8N7U9 141 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 ANAPC16Q96DE5 110 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 LINC01587Q99440 93 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 AKIP1Q9NQ31 210 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 SIRT7Q9NRC8 400 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 CBY1Q9Y3M2 126 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 OR2W1Q9Y3N9 320 aa5.34□□□□□ -1.56
SCN1A-217ENST00000637988 SULT1A2P50226 295 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 SELENOTP62341 195 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 DHRS2Q13268 280 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 TEX261Q6UWH6 196 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ITLN1Q8WWA0 313 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 LY75O60449 1722 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 RPS27P42677 84 aaKnown RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 RTN4RL2Q86UN3 420 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ABHD12Q8N2K0 398 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 FDCSPQ8NFU4 85 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ZMAT4Q9H898 229 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 IDI2-AS1Q9NZ38 188 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CEACAM8P31997 349 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 TIMM23BQ5SRD1 257 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 FAM57AQ8TBR7 257 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CNTD2Q9H8S5 307 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CBLN4Q9NTU7 201 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 IGHV3-21A0A0B4J1V1 117 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ASAH2BP0C7U1 165 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 PGA4P0DJD7 388 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 PGA5P0DJD9 388 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 LY6DQ14210 128 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ELOBQ15370 118 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 NCCRP1Q6ZVX7 275 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF502Q8TBZ5 544 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 NEU1Q99519 415 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 SRD5A3Q9H8P0 318 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 G6PC2Q9NQR9 355 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 MAP1LC3B2A6NCE7 125 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 C1QAP02745 245 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CX3CL1P78423 397 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CD69Q07108 199 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CEBPEQ15744 281 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF66Q6ZN08 573 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 RNF165Q6ZSG1 346 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 OR9G4Q8NGQ1 327 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 GPR82Q96P67 336 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 MAP1LC3BQ9GZQ8 125 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ISG20L2Q9H9L3 353 aaKnown RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF629Q9UEG4 869 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 TCRBV16S1A1N1A0A5B0 115 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 SIX6O95475 246 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ISL1P61371 349 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 LDLRAD2Q5SZI1 272 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 PRSS41Q7RTY9 318 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 SLC35E3Q7Z769 313 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 ZIC4Q8N9L1 334 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 OR8G5Q8NG78 346 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 OR4C5Q8NGB2 326 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 PPP1R1CQ8WVI7 109 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 DNASE2BQ8WZ79 361 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CBY3A6NI87 242 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CST4P01036 141 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 FAM181AQ8N9Y4 354 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 TET1Q8NFU7 2136 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 SP7Q8TDD2 431 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-217ENST00000637988 C2CD4CQ8TF44 421 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM186Q96B77 213 aa5.33□□□□□ -1.56
SCN1A-217ENST00000637988 CYB5R3P00387 301 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 LGALS3P17931 250 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FCGR2BP31994 310 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 IL24Q13007 206 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 JOSD1Q15040 202 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SP6Q3SY56 376 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 WDR38Q5JTN6 314 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OVCH2Q7RTZ1 564 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF645Q8N7E2 425 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR9G1Q8NH87 305 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR13C6PQ8NH95 151 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 ADAMTSL1Q8N6G6 1762 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SIPA1L3O60292 1781 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SPINK4O60575 86 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 ISG15P05161 165 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 LSAMPQ13449 338 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 LRP11Q86VZ4 500 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 CXCL16Q9H2A7 254 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR4C46A6NHA9 309 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 RPL34P49207 117 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 DYNLT3P51808 116 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 BSPH1Q075Z2 132 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PDZK1IP1Q13113 114 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 INPP5JQ15735 1006 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PDZD11Q5EBL8 140 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PHLDA1Q8WV24 401 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 CDCA4Q9BXL8 241 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FAM60AQ9NP50 221 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 MYLKQ15746 1914 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 H3BRM9 83 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 GEMIN2O14893 280 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 CTSDP07339 412 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 MPV17P39210 176 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms