RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CRIP2P52943 208 aaPredicted RBP14.9□□□□□ -0.02
CLN3-262ENST00000637699 TMEM267Q0VDI3 215 aaPredicted RBP14.9□□□□□ -0.02
CLN3-262ENST00000637699 ST3GAL4Q11206 333 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 AWAT2Q6E213 333 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 FAM131AQ6UXB0 335 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 ANKRD13BQ86YJ7 626 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 SGPP2Q8IWX5 399 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 TCTEX1D1Q8N7M0 179 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 ZNF485Q8NCK3 441 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 MRPL30Q8TCC3 161 aaKnown RBP14.9□□□□□ -0.02
CLN3-262ENST00000637699 GHSRQ92847 366 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 SMIM19Q96E16 107 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 YPEL2Q96QA6 119 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 ELOVL1Q9BW60 279 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 TRBV5-5A0A0J9YX44 114 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 RRHO14718 337 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 HSPA12AO43301 675 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 GPX5O75715 221 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 CRTAPO75718 401 aaPredicted RBP14.89□□□□□ -0.03
CLN3-262ENST00000637699 RGS11O94810 467 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 MGMTP16455 207 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 VEGFCP49767 419 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 TPPP2P59282 170 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 HTD2P86397 168 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 ACTBL2Q562R1 376 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 SIGIRRQ6IA17 410 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 UNQ5815/PRO19632Q6UWF5 114 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 PPP1R27Q86WC6 154 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 LYPD6Q86Y78 171 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 ZFP41Q8N8Y5 198 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 OR2AK2Q8NG84 335 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 FAM103A1Q9BTL3 118 aaKnown RBP14.89□□□□□ -0.03
CLN3-262ENST00000637699 NKX1-2Q9UD57 310 aaPredicted RBP14.89□□□□□ -0.03
CLN3-262ENST00000637699 STUB1Q9UNE7 303 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 GAB2Q9UQC2 676 aa14.89□□□□□ -0.03
CLN3-262ENST00000637699 IGLV1-51P01701 117 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 GLAP06280 429 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 ARSBP15848 533 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 DMKNQ6E0U4 476 aaPredicted RBP14.88□□□□□ -0.03
CLN3-262ENST00000637699 PYHIN1Q6K0P9 492 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 CD200R1LQ6Q8B3 271 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 ZNF554Q86TJ5 538 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 C8orf59Q8N0T1 100 aaPredicted RBP14.88□□□□□ -0.03
CLN3-262ENST00000637699 FBLIM1Q8WUP2 373 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 GALMQ96C23 342 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 RHOVQ96L33 236 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 Q96M66 194 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 CLCC1Q96S66 551 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 CNOT2Q9NZN8 540 aaKnown RBP14.88□□□□□ -0.03
CLN3-262ENST00000637699 RNF150Q9ULK6 438 aa14.88□□□□□ -0.03
CLN3-262ENST00000637699 PLECQ15149 4684 aaKnown RBP14.87□□□□□ -0.03
CLN3-262ENST00000637699 FAM90A7PA6NKC0 464 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 FAM90A23PA8MXZ1 464 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 A8MZ25 164 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 ST8SIA5O15466 376 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 GSTP1P09211 210 aaKnown RBP14.87□□□□□ -0.03
CLN3-262ENST00000637699 RPS11P62280 158 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLN3-262ENST00000637699 Q499Y3 187 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 GLDNQ6ZMI3 551 aaPredicted RBP14.87□□□□□ -0.03
CLN3-262ENST00000637699 LFNGQ8NES3 379 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 SPATA25Q9BR10 227 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 IFI27L2Q9H2X8 130 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 PSORS1C1Q9UIG5 152 aa14.87□□□□□ -0.03
CLN3-262ENST00000637699 TNCP24821 2201 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 EFCAB10A6NFE3 127 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 H7C2Y5 167 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 PDCD6O75340 191 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 CT45A6P0DMU7 189 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 CT45A5P0DMU8 189 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 CT45A7P0DMV0 189 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 FSTP19883 344 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 CD40LGP29965 261 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 AKIRIN2Q53H80 203 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 RPL39P5Q59GN2 51 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 LY6G6FQ5SQ64 297 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 IL1F10Q8WWZ1 152 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 FAM46BQ96A09 425 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 PGLYRP3Q96LB9 341 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 OR14A2Q96R54 314 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 PLCXD1Q9NUJ7 323 aa14.86□□□□□ -0.03
CLN3-262ENST00000637699 ARPC1BO15143 372 aaKnown RBP14.85□□□□□ -0.03
CLN3-262ENST00000637699 TRGV3P03979 118 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 SNRPBP14678 240 aaKnown RBP14.85□□□□□ -0.03
CLN3-262ENST00000637699 MED21Q13503 144 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 HAGHQ16775 308 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 YIF1BQ5BJH7 314 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 AHSA2Q719I0 299 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 BPIFB6Q8NFQ5 453 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 SLA2Q9H6Q3 261 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 PIPOXQ9P0Z9 390 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 STEAP1Q9UHE8 339 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 LRRC42Q9Y546 428 aa14.85□□□□□ -0.03
CLN3-262ENST00000637699 TRBV5-7A0A0A0MS05 114 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 PNMA8CA0A1B0GUJ8 204 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 RAB29O14966 203 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 IFNA6P05013 189 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 HMGN3Q15651 99 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 FAM71F2Q6NXP2 309 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 NRG4Q8WWG1 115 aa14.84□□□□□ -0.03
CLN3-262ENST00000637699 RANGRFQ9HD47 186 aaPredicted RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms