RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF702PQ9H963 129 aa14.61□□□□□ -0.07
CLN3-259ENST00000637551 SAA2-SAA4A0A096LPE2 208 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 IGKV1-6A0A0C4DH72 117 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 A0A1W2PPE3 182 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 TMEM235A6NFC5 223 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 OR5H14A6NHG9 310 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 SNRNP70P08621 437 aaKnown RBP14.6□□□□□ -0.07
CLN3-259ENST00000637551 SAA2P0DJI9 122 aaPredicted RBP14.6□□□□□ -0.07
CLN3-259ENST00000637551 CEACAM6P40199 344 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 LSAMPQ13449 338 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 MZT2AQ6P582 158 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 TMEM219Q86XT9 240 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 CYYR1Q96J86 154 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 CITED1Q99966 193 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 AUNIPQ9H7T9 357 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 SCOCQ9UIL1 159 aa14.6□□□□□ -0.07
CLN3-259ENST00000637551 A0A075B6Q4 140 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 MOSP00540 346 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 ZNF182P17025 639 aaPredicted RBP14.59□□□□□ -0.07
CLN3-259ENST00000637551 TMEM11P17152 192 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 TGFBR1P36897 503 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 TAGLNQ01995 201 aaKnown RBP14.59□□□□□ -0.07
CLN3-259ENST00000637551 DIAPH2-AS1Q14236 149 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 CNIH2Q6PI25 160 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 MOB3BQ86TA1 216 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 SAMD12Q8N8I0 201 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 RNF5Q99942 180 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 RDH8Q9NYR8 311 aa14.59□□□□□ -0.07
CLN3-259ENST00000637551 PKD1L1Q8TDX9 2849 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 RBBP9O75884 186 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 SLC22A5O76082 557 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 IGKV1D-33P01593 117 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 IGKV1-33P01594 117 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 MC5RP33032 325 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 SOX6P35712 828 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 ZNF251Q9BRH9 671 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 C11orf54Q9H0W9 315 aaPredicted RBP14.58□□□□□ -0.08
CLN3-259ENST00000637551 OR1A1Q9P1Q5 309 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 ZNF221Q9UK13 617 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 ZNF580Q9UK33 172 aa14.58□□□□□ -0.08
CLN3-259ENST00000637551 TRAV18A0A075B6X5 111 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 HES1Q14469 280 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 MSMO1Q15800 293 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 TMEM69Q5SWH9 247 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 FAM53AQ6NSI3 398 aaPredicted RBP14.57□□□□□ -0.08
CLN3-259ENST00000637551 H1FOOQ8IZA3 346 aaPredicted RBP14.57□□□□□ -0.08
CLN3-259ENST00000637551 C5orf56Q8N8D9 126 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 C15orf40Q8WUR7 153 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 EAF1Q96JC9 268 aaPredicted RBP14.57□□□□□ -0.08
CLN3-259ENST00000637551 NABP2Q9BQ15 211 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 GINS4Q9BRT9 223 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 WNT10AQ9GZT5 417 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 SERTAD4Q9NUC0 356 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 LIN7CQ9NUP9 197 aaKnown RBP14.57□□□□□ -0.08
CLN3-259ENST00000637551 ANXA10Q9UJ72 324 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 ADAM30Q9UKF2 790 aa14.57□□□□□ -0.08
CLN3-259ENST00000637551 SMIM31A0A1B0GVY4 71 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 SSX5O60225 188 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 NOL3O60936 208 aaKnown RBP14.56□□□□□ -0.08
CLN3-259ENST00000637551 AMY1AP04745 511 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 AMY2AP04746 511 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 GSTT2P0CG29 244 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 GSTT2BP0CG30 244 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 REG1BP48304 166 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 HOGA1Q86XE5 327 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 OR5AN1Q8NGI8 311 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 WIPF2Q8TF74 440 aaPredicted RBP14.56□□□□□ -0.08
CLN3-259ENST00000637551 NUDCD2Q8WVJ2 157 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 NAA50Q9GZZ1 169 aaKnown RBP14.56□□□□□ -0.08
CLN3-259ENST00000637551 SCPEP1Q9HB40 452 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 CCDC59Q9P031 241 aaKnown RBP14.56□□□□□ -0.08
CLN3-259ENST00000637551 RABL2AQ9UBK7 228 aaPredicted RBP14.56□□□□□ -0.08
CLN3-259ENST00000637551 ANAPC10Q9UM13 185 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 RABL2BQ9UNT1 228 aa14.56□□□□□ -0.08
CLN3-259ENST00000637551 ZNF701M0R085 212 aaPredicted RBP14.55□□□□□ -0.08
CLN3-259ENST00000637551 ST8SIA5O15466 376 aa14.55□□□□□ -0.08
CLN3-259ENST00000637551 IGSF11Q5DX21 431 aa14.55□□□□□ -0.08
CLN3-259ENST00000637551 CLVS1Q8IUQ0 354 aaPredicted RBP14.55□□□□□ -0.08
CLN3-259ENST00000637551 BEST4Q8NFU0 473 aa14.55□□□□□ -0.08
CLN3-259ENST00000637551 ZNF230Q9UIE0 474 aaPredicted RBP14.55□□□□□ -0.08
CLN3-259ENST00000637551 SULT1C2O00338 296 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 BET1O15155 118 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 CD24P25063 80 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 VDAC2P45880 294 aaPredicted RBP14.54□□□□□ -0.08
CLN3-259ENST00000637551 GPR12P47775 334 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 BLCAPP62952 87 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 PRR31Q5SQ13 230 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 FAM71E2Q8N5Q1 922 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 ADTRPQ96IZ2 230 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 ST6GALNAC5Q9BVH7 336 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 MRPL20Q9BYC9 149 aaKnown RBP14.54□□□□□ -0.08
CLN3-259ENST00000637551 OR2W1Q9Y3N9 320 aa14.54□□□□□ -0.08
CLN3-259ENST00000637551 TUSC2O75896 110 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 IGHG2P01859 326 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 NAT1P18440 290 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 OR3A3P47888 321 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 TAS2R20P59543 309 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 ABCA11PQ4W5N1 156 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 PDPNQ86YL7 162 aa14.53□□□□□ -0.08
CLN3-259ENST00000637551 NPBQ8NG41 125 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms