RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 IGHV2-5P01817 119 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 RAB7AP51149 207 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 ERVFRD-1P60508 538 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 ESCO2Q56NI9 601 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 CT45A1Q5HYN5 189 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 LIAT1Q6ZQX7 453 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 LRTM2Q8N967 370 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 CT45A3Q8NHU0 189 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 LEAP2Q969E1 77 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 ABHD14BQ96IU4 210 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 ABHD14AQ9BUJ0 271 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 TMEM222Q9H0R3 208 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 RAB18Q9NP72 206 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 PPIAL4CA0A0B4J2A2 164 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 A0A1W2PPH5 198 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 C22orf46C9J442 243 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 H0Y980 276 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 NDUFS8O00217 210 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 SLC31A2O15432 143 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 B3GALNT1O75752 331 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 PPIAL4GP0DN37 164 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 SRSF4Q08170 494 aaKnown RBP15.12■□□□□ 0.01
CLN3-254ENST00000637050 Q3ZCU0 254 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 C10orf105Q8TEF2 133 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 ASB13Q8WXK3 278 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 FAM168AQ92567 244 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 RAB39BQ96DA2 213 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 GSX2Q9BZM3 304 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 CHIAQ9BZP6 476 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 SDHAF2Q9NX18 166 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 GAB2Q9UQC2 676 aa15.12■□□□□ 0.01
CLN3-254ENST00000637050 CCSO14618 274 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 RBP4P02753 201 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 UCP1P25874 307 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 RAP2BP61225 183 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 LGI3Q8N145 548 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 TENM4Q6N022 2769 aa15.11■□□□□ 0.01
CLN3-254ENST00000637050 A0A087X0M5 115 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 A0A1B0GX30 115 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 ADAP1O75689 374 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 IGHV1-8P0DP01 117 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 GPR12P47775 334 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 KRTAP10-9P60411 292 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 LMO4P61968 165 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 SRPXP78539 464 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 SLC25A48Q6ZT89 311 aaKnown RBP15.1■□□□□ 0.01
CLN3-254ENST00000637050 OR51H1Q8NH63 302 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 CLDND2Q8NHS1 167 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 LHFPL5Q8TAF8 219 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 WDR89Q96FK6 387 aaPredicted RBP15.1■□□□□ 0.01
CLN3-254ENST00000637050 TMEM56Q96MV1 263 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 PIMREGQ9BSJ6 248 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 TMEM56-RWDD3S4R434 201 aa15.1■□□□□ 0.01
CLN3-254ENST00000637050 LOC105371242A0A075B767 164 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 RNF212BA8MTL3 300 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 KIAA1324LA8MWY0 1029 aaPredicted RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 VWC2LB2RUY7 222 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 PROP1O75360 226 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 C1QBP02746 253 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 LIPFP07098 398 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 ZFP69Q49AA0 526 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 CLEC2AQ6UVW9 174 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 C8orf31Q8N9H6 132 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 MARVELD3Q96A59 401 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 PERPQ96FX8 193 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 C18orf12Q96KH6 178 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 MALRD1Q5VYJ5 2156 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 USP9YO00507 2555 aaPredicted RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 A0A1W2PPE3 182 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 SMLR1H3BR10 107 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 CDS2O95674 445 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 GNG10P50151 68 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 ZNF66Q6ZN08 573 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 ODF3L1Q8IXM7 274 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 OR2T35Q8NGX2 323 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 ZNF596Q8TC21 504 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 HSD17B10Q99714 261 aaKnown RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 LIN7CQ9NUP9 197 aaKnown RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 SESN1Q9Y6P5 492 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 YLPM1P49750 1951 aaKnown RBP15.09■□□□□ 0.01
CLN3-254ENST00000637050 AKAP6Q13023 2319 aa15.09■□□□□ 0.01
CLN3-254ENST00000637050 DOCK11Q5JSL3 2073 aa15.08■□□□□ 0.01
CLN3-254ENST00000637050 A8MXK9 166 aa15.08■□□□□ 0
CLN3-254ENST00000637050 G3V3Q6 166 aa15.08■□□□□ 0
CLN3-254ENST00000637050 HOXB5P09067 269 aa15.08■□□□□ 0
CLN3-254ENST00000637050 EIF2B2P49770 351 aaKnown RBP15.08■□□□□ 0
CLN3-254ENST00000637050 BTNL3Q6UXE8 466 aa15.08■□□□□ 0
CLN3-254ENST00000637050 GSG1LQ6UXU4 331 aa15.08■□□□□ 0
CLN3-254ENST00000637050 METTL8Q9H825 291 aaKnown RBP15.08■□□□□ 0
CLN3-254ENST00000637050 C5orf51A6NDU8 294 aa15.07■□□□□ 0
CLN3-254ENST00000637050 FAM25EA8MYX2 175 aa15.07■□□□□ 0
CLN3-254ENST00000637050 RAB29O14966 203 aa15.07■□□□□ 0
CLN3-254ENST00000637050 ZFP36P26651 326 aaKnown RBP15.07■□□□□ 0
CLN3-254ENST00000637050 DSCR9P59020 149 aa15.07■□□□□ 0
CLN3-254ENST00000637050 RPL30P62888 115 aaKnown RBP15.07■□□□□ 0
CLN3-254ENST00000637050 CATR1Q13166 79 aa15.07■□□□□ 0
CLN3-254ENST00000637050 SELENOHQ8IZQ5 122 aaKnown RBP15.07■□□□□ 0
CLN3-254ENST00000637050 LINC00311Q8N616 119 aa15.07■□□□□ 0
CLN3-254ENST00000637050 IL22RA2Q969J5 263 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms