RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SLC31A2O15432 143 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 NDUFS7O75251 213 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 ZNF16P17020 682 aaPredicted RBP13.89□□□□□ -0.19
CLN3-252ENST00000636907 NFYBP25208 207 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 BTNL3Q6UXE8 466 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 ZNF841Q6ZN19 808 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 FAM216AQ8WUB2 273 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 RAB1CQ92928 201 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 RBPMSQ93062 196 aaKnown RBP13.89□□□□□ -0.19
CLN3-252ENST00000636907 TIMD4Q96H15 378 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 ZNF714Q96N38 554 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 IFI27L2Q9H2X8 130 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 GAL3ST2Q9H3Q3 398 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 CHODLQ9H9P2 273 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 LIN7CQ9NUP9 197 aaKnown RBP13.89□□□□□ -0.19
CLN3-252ENST00000636907 LPAR3Q9UBY5 353 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 DCHS2Q6V1P9 2916 aa13.89□□□□□ -0.19
CLN3-252ENST00000636907 ITGB1BP1O14713 200 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 GPR12P47775 334 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 ERVFRD-1P60508 538 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 RPL30P62888 115 aaKnown RBP13.88□□□□□ -0.19
CLN3-252ENST00000636907 TLE4Q04727 773 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 TMEM30BQ3MIR4 351 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 Q3ZCU0 254 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 OR52M1Q8NGK5 317 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 THAP6Q8TBB0 222 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 IL22RA2Q969J5 263 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 ABHD14AQ9BUJ0 271 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 PLEKHF2Q9H8W4 249 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 MBD2Q9UBB5 411 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 RPUSD1Q9UJJ7 312 aaKnown RBP13.88□□□□□ -0.19
CLN3-252ENST00000636907 MYO18BQ8IUG5 2567 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 A0A1W2PPE3 182 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 DUXBA0A1W2PPF3 345 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 H0YIZ8 118 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 L7N2F9 121 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 SERPINE2P07093 398 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 RAB32Q13637 225 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 TMEM155Q4W5P6 130 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 CT45A1Q5HYN5 189 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 TMEM65Q6PI78 240 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 ZNF546Q86UE3 836 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 ZNF439Q8NDP4 499 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 CT45A3Q8NHU0 189 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 RNF126Q9BV68 326 aa13.88□□□□□ -0.19
CLN3-252ENST00000636907 UBR5O95071 2799 aaPredicted RBP13.87□□□□□ -0.19
CLN3-252ENST00000636907 TSC22D2O75157 780 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 PROP1O75360 226 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 F12P00748 615 aaPredicted RBP13.87□□□□□ -0.19
CLN3-252ENST00000636907 IGKV1-39P01597 117 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 IGKV1D-39P04432 117 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 RPA2P15927 270 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 ZNF585BQ52M93 769 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 OR10A7Q8NGE5 316 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 MIOXQ9UGB7 285 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 TNFSF18Q9UNG2 199 aa13.87□□□□□ -0.19
CLN3-252ENST00000636907 TRBV23-1A0A0A0MS06 115 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 OVOL3O00110 214 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 CLDN1O95832 211 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 RAB7AP51149 207 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 EFNA4P52798 201 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 DLX6P56179 175 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 TMEM33P57088 247 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 LINC00205P59089 165 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 S100A10P60903 97 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 CATR1Q13166 79 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 HEPN1Q6WQI6 88 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 ZNF66Q6ZN08 573 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 OR8B3Q8NGG8 313 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 NEIL1Q96FI4 390 aaPredicted RBP13.86□□□□□ -0.19
CLN3-252ENST00000636907 OR8B2Q96RD0 313 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 GON7Q9BXV9 100 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 MFFQ9GZY8 342 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 SLA2Q9H6Q3 261 aa13.86□□□□□ -0.19
CLN3-252ENST00000636907 LINC00473A8K010 186 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 SNAPC5O75971 98 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 VDAC1P21796 283 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 GNG10P50151 68 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 RPL39P5Q59GN2 51 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 NMSQ5H8A3 153 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 OR2B11Q5JQS5 317 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 PRSS54Q6PEW0 395 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 TCTEX1D2Q8WW35 142 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 HSD17B10Q99714 261 aaKnown RBP13.85□□□□□ -0.19
CLN3-252ENST00000636907 OR5AC2Q9NZP5 309 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 A0A0G2JRQ6 117 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 C17orf98A8MV24 154 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 RGS13O14921 159 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 RAMP3O60896 148 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 SCGB1D2O95969 90 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 LYL1P12980 280 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 DUTP33316 252 aaKnown RBP13.85□□□□□ -0.19
CLN3-252ENST00000636907 BRWD1-AS2P59051 145 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 OPCMLQ14982 345 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 WDR25Q64LD2 544 aaPredicted RBP13.85□□□□□ -0.19
CLN3-252ENST00000636907 C1orf229Q6ZS94 237 aaPredicted RBP13.85□□□□□ -0.19
CLN3-252ENST00000636907 TMUB2Q71RG4 321 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 FOXRED2Q8IWF2 684 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 ODF3L1Q8IXM7 274 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 IGFBPL1Q8WX77 278 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms