RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 HERPUD1Q15011 391 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 IGSF11Q5DX21 431 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 LY6G6FQ5SQ64 297 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 Q6ZS49 121 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 MOB3BQ86TA1 216 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 OR8H3Q8N146 312 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 CAPSLQ8WWF8 208 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 CABLES2Q9BTV7 478 aa14.55□□□□□ -0.08
CLN3-243ENST00000635973 C6orf62Q9GZU0 229 aaPredicted RBP14.55□□□□□ -0.08
CLN3-243ENST00000635973 RBM38Q9H0Z9 239 aaKnown RBP14.55□□□□□ -0.08
CLN3-243ENST00000635973 IGKV1D-8A0A087WSZ0 117 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 MEIS3P1A6NDR6 274 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 TXNL1O43396 289 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 TSPAN9O75954 239 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 CBX5P45973 191 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 ARPC4P59998 168 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 KRTAP10-3P60369 221 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 ZNF816Q0VGE8 651 aaPredicted RBP14.54□□□□□ -0.08
CLN3-243ENST00000635973 LIAT1Q6ZQX7 453 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 TMEM219Q86XT9 240 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 TGIF2LXQ8IUE1 241 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 DRAM1Q8N682 238 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 OR56B4Q8NH76 319 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 PIFOQ8TCI5 191 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 DCUN1D5Q9BTE7 237 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 RDH8Q9NYR8 311 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 EXTL2Q9UBQ6 330 aa14.54□□□□□ -0.08
CLN3-243ENST00000635973 TET2Q6N021 2002 aaPredicted RBP14.53□□□□□ -0.08
CLN3-243ENST00000635973 A0A1W2PPI3 338 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 DIRAS3O95661 229 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 FCER2P06734 321 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 CTXN2P0C2S0 81 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 CD24P25063 80 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 PRSS3P35030 304 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 HES1Q14469 280 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 PDLIM3Q53GG5 364 aaPredicted RBP14.53□□□□□ -0.08
CLN3-243ENST00000635973 SNX29P2Q8IUI4 249 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 GVQW1Q8N7I0 195 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 BEST4Q8NFU0 473 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 OR4C13Q8NGP0 309 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 RTN4IP1Q8WWV3 396 aaPredicted RBP14.53□□□□□ -0.08
CLN3-243ENST00000635973 PARP12Q9H0J9 701 aaKnown RBP14.53□□□□□ -0.08
CLN3-243ENST00000635973 IFI27L2Q9H2X8 130 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 PIPOXQ9P0Z9 390 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 ANXA10Q9UJ72 324 aa14.53□□□□□ -0.08
CLN3-243ENST00000635973 RBM7Q9Y580 266 aaKnown RBP14.53□□□□□ -0.08
CLN3-243ENST00000635973 SAA2-SAA4A0A096LPE2 208 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 TRBV6-7A0A0A0MS04 114 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 IGHV1-3A0A0C4DH29 117 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 ZNF701M0R085 212 aaPredicted RBP14.52□□□□□ -0.09
CLN3-243ENST00000635973 ITGB1BP1O14713 200 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 RAB29O14966 203 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 FAM106CPP0CH98 169 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 SAA2P0DJI9 122 aaPredicted RBP14.52□□□□□ -0.09
CLN3-243ENST00000635973 ZNF137PP52743 207 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 C2orf68Q2NKX9 166 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 CNIH2Q6PI25 160 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 LAX1Q8IWV1 398 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 MCFD2Q8NI22 146 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 S1PR3Q99500 378 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 C11orf54Q9H0W9 315 aaPredicted RBP14.52□□□□□ -0.09
CLN3-243ENST00000635973 ZNF221Q9UK13 617 aa14.52□□□□□ -0.09
CLN3-243ENST00000635973 IGHV3-72A0A0B4J1Y9 119 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 A6NDX4 124 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 CTDSP2O14595 271 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 LANCL1O43813 399 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 SNRNP70P08621 437 aaKnown RBP14.51□□□□□ -0.09
CLN3-243ENST00000635973 GPR12P47775 334 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 OR3A3P47888 321 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 HOGA1Q86XE5 327 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 ST6GALNAC6Q969X2 333 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 ABHD14BQ96IU4 210 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 AKR1E2Q96JD6 320 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 SLIRPQ9GZT3 109 aaKnown RBP14.51□□□□□ -0.09
CLN3-243ENST00000635973 RNF150Q9ULK6 438 aa14.51□□□□□ -0.09
CLN3-243ENST00000635973 CHST1O43916 411 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 IGKV1D-33P01593 117 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 IGKV1-33P01594 117 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 HLA-DQB1P01920 261 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 CSF1P09603 554 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 C11orf88Q6PI97 169 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 OR2T6Q8NHC8 308 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 NPFFR1Q9GZQ6 430 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 MIXL1Q9H2W2 232 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 GHITMQ9H3K2 345 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 SCPEP1Q9HB40 452 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 NDUFA13Q9P0J0 144 aa14.5□□□□□ -0.09
CLN3-243ENST00000635973 OR8U9P0C7N5 309 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 TMEM11P17152 192 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 RPL39P5Q59GN2 51 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 RNASE12Q5GAN4 147 aaKnown RBP14.49□□□□□ -0.09
CLN3-243ENST00000635973 FAM71F2Q6NXP2 309 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 CCBE1Q6UXH8 406 aaPredicted RBP14.49□□□□□ -0.09
CLN3-243ENST00000635973 ZNF833PQ6ZTB9 187 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 ODF3L1Q8IXM7 274 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 H1FOOQ8IZA3 346 aaPredicted RBP14.49□□□□□ -0.09
CLN3-243ENST00000635973 OR8U1Q8NH10 309 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 FAM110DQ8TAY7 271 aaPredicted RBP14.49□□□□□ -0.09
CLN3-243ENST00000635973 C15orf40Q8WUR7 153 aa14.49□□□□□ -0.09
CLN3-243ENST00000635973 CFHR4Q92496 578 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms