RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ST8SIA5O15466 376 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 PEX14O75381 377 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 RORCP51449 518 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 FAM71F2Q6NXP2 309 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 ZNF833PQ6ZTB9 187 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 SAMD12Q8N8I0 201 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 MAFIPQ8WZ33 124 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 EAF1Q96JC9 268 aaPredicted RBP16.53■□□□□ 0.24
CLN3-240ENST00000631023 CABLES2Q9BTV7 478 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 ST6GALNAC5Q9BVH7 336 aa16.53■□□□□ 0.24
CLN3-240ENST00000631023 NAA50Q9GZZ1 169 aaKnown RBP16.53■□□□□ 0.24
CLN3-240ENST00000631023 C11orf54Q9H0W9 315 aaPredicted RBP16.53■□□□□ 0.24
CLN3-240ENST00000631023 SAA2-SAA4A0A096LPE2 208 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 MOSP00540 346 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 SAA2P0DJI9 122 aaPredicted RBP16.52■□□□□ 0.24
CLN3-240ENST00000631023 OR3A3P47888 321 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 HERPUD1Q15011 391 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 ABCA11PQ4W5N1 156 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 FBLN7Q53RD9 439 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 SGMS2Q8NHU3 365 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 NUDCD2Q8WVJ2 157 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 CITED1Q99966 193 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 AGMATQ9BSE5 352 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 RDH8Q9NYR8 311 aa16.52■□□□□ 0.24
CLN3-240ENST00000631023 TRBV6-7A0A0A0MS04 114 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 XRCC3O43542 346 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 IGSF11Q5DX21 431 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 TET2Q6N021 2002 aaPredicted RBP16.51■□□□□ 0.23
CLN3-240ENST00000631023 ACOT12Q8WYK0 555 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 GINS4Q9BRT9 223 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 TOLLIPQ9H0E2 274 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 PARP12Q9H0J9 701 aaKnown RBP16.51■□□□□ 0.23
CLN3-240ENST00000631023 ZNF221Q9UK13 617 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 FGF16O43320 207 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 CTXN2P0C2S0 81 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 VDAC2P45880 294 aaPredicted RBP16.51■□□□□ 0.23
CLN3-240ENST00000631023 RPL5P46777 297 aaKnown RBP16.51■□□□□ 0.23
CLN3-240ENST00000631023 LSAMPQ13449 338 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 ABHD14BQ96IU4 210 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 SERTAD4Q9NUC0 356 aa16.51■□□□□ 0.23
CLN3-240ENST00000631023 NCBP2LA6PVI3 153 aaKnown RBP16.5■□□□□ 0.23
CLN3-240ENST00000631023 AMY1AP04745 511 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 AMY2AP04746 511 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 VSIG10L2P0DP72 767 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 SRSF4Q08170 494 aaKnown RBP16.5■□□□□ 0.23
CLN3-240ENST00000631023 Q6ZS46 218 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 KLHDC1Q8N7A1 406 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 CMTM3Q96MX0 182 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 MRPL20Q9BYC9 149 aaKnown RBP16.5■□□□□ 0.23
CLN3-240ENST00000631023 AUNIPQ9H7T9 357 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 COMMD3Q9UBI1 195 aa16.5■□□□□ 0.23
CLN3-240ENST00000631023 ZNF736B4DX44 427 aaPredicted RBP16.49■□□□□ 0.23
CLN3-240ENST00000631023 KRTAP10-3P60369 221 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 C9orf152Q5JTZ5 239 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 Q8N6K4 173 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 C5orf56Q8N8D9 126 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 OR8H1Q8NGG4 311 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 AP3S1Q92572 193 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 NABP2Q9BQ15 211 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 RNF150Q9ULK6 438 aa16.49■□□□□ 0.23
CLN3-240ENST00000631023 SMIM31A0A1B0GVY4 71 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 SSX5O60225 188 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 GPR12P47775 334 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 RPL39P5Q59GN2 51 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 TMEM69Q5SWH9 247 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 MZT2AQ6P582 158 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 CLVS1Q8IUQ0 354 aaPredicted RBP16.48■□□□□ 0.23
CLN3-240ENST00000631023 ZNF251Q9BRH9 671 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 RBM7Q9Y580 266 aaKnown RBP16.48■□□□□ 0.23
CLN3-240ENST00000631023 WNK1Q9H4A3 2382 aa16.48■□□□□ 0.23
CLN3-240ENST00000631023 IGKV1D-8A0A087WSZ0 117 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 APOA1P02647 267 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 ZNF182P17025 639 aaPredicted RBP16.47■□□□□ 0.23
CLN3-240ENST00000631023 CBX5P45973 191 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 CNIH2Q6PI25 160 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.47■□□□□ 0.23
CLN3-240ENST00000631023 RAB2BQ8WUD1 216 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 SCOCQ9UIL1 159 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 ANXA10Q9UJ72 324 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 OR8U9P0C7N5 309 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 MC5RP33032 325 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 TMBIM6P55061 237 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 H1FOOQ8IZA3 346 aaPredicted RBP16.47■□□□□ 0.23
CLN3-240ENST00000631023 OR8U1Q8NH10 309 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 BCL7BQ9BQE9 202 aa16.47■□□□□ 0.23
CLN3-240ENST00000631023 OR5H14A6NHG9 310 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 SH2D7A6NKC9 451 aaPredicted RBP16.46■□□□□ 0.23
CLN3-240ENST00000631023 CT45A6P0DMU7 189 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 CT45A5P0DMU8 189 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 CT45A7P0DMV0 189 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 SOX6P35712 828 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 RASL11BQ9BPW5 248 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 WNT10AQ9GZT5 417 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 OR2D2Q9H210 308 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 GAB2Q9UQC2 676 aa16.46■□□□□ 0.23
CLN3-240ENST00000631023 NOL3O60936 208 aaKnown RBP16.45■□□□□ 0.22
CLN3-240ENST00000631023 TMEM95Q3KNT9 176 aa16.45■□□□□ 0.22
CLN3-240ENST00000631023 HOGA1Q86XE5 327 aa16.45■□□□□ 0.22
CLN3-240ENST00000631023 BEST4Q8NFU0 473 aa16.45■□□□□ 0.22
CLN3-240ENST00000631023 PLSCR3Q9NRY6 295 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms