RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CTXN2P0C2S0 81 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 CD24P25063 80 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 PRSS3P35030 304 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 HES1Q14469 280 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 SNX29P2Q8IUI4 249 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 GVQW1Q8N7I0 195 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 BEST4Q8NFU0 473 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 RTN4IP1Q8WWV3 396 aaPredicted RBP14.53□□□□□ -0.08
CLN3-239ENST00000628023 PARP12Q9H0J9 701 aaKnown RBP14.53□□□□□ -0.08
CLN3-239ENST00000628023 IFI27L2Q9H2X8 130 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 PIPOXQ9P0Z9 390 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 ANXA10Q9UJ72 324 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 RBM7Q9Y580 266 aaKnown RBP14.53□□□□□ -0.08
CLN3-239ENST00000628023 SAA2-SAA4A0A096LPE2 208 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 TRBV6-7A0A0A0MS04 114 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 IGHV1-3A0A0C4DH29 117 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 ZNF701M0R085 212 aaPredicted RBP14.52□□□□□ -0.09
CLN3-239ENST00000628023 ITGB1BP1O14713 200 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 RAB29O14966 203 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 WIPF1O43516 503 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 FAM106CPP0CH98 169 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 SAA2P0DJI9 122 aaPredicted RBP14.52□□□□□ -0.09
CLN3-239ENST00000628023 ZNF137PP52743 207 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 CNIH2Q6PI25 160 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 LAX1Q8IWV1 398 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 MCFD2Q8NI22 146 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 TAF15Q92804 592 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLN3-239ENST00000628023 S1PR3Q99500 378 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 C11orf54Q9H0W9 315 aaPredicted RBP14.52□□□□□ -0.09
CLN3-239ENST00000628023 ZNF221Q9UK13 617 aa14.52□□□□□ -0.09
CLN3-239ENST00000628023 IGHV3-72A0A0B4J1Y9 119 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 A6NDX4 124 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 CTDSP2O14595 271 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 LANCL1O43813 399 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 SNRNP70P08621 437 aaKnown RBP14.51□□□□□ -0.09
CLN3-239ENST00000628023 GPR12P47775 334 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 OR3A3P47888 321 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 RAG2P55895 527 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 HOGA1Q86XE5 327 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 ST6GALNAC6Q969X2 333 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 ABHD14BQ96IU4 210 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 AKR1E2Q96JD6 320 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 SLIRPQ9GZT3 109 aaKnown RBP14.51□□□□□ -0.09
CLN3-239ENST00000628023 C1RLQ9NZP8 487 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 RNF150Q9ULK6 438 aa14.51□□□□□ -0.09
CLN3-239ENST00000628023 PKD1L1Q8TDX9 2849 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 A0A1B0GUS0 222 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 CHST1O43916 411 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 IGKV1D-33P01593 117 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 IGKV1-33P01594 117 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 HLA-DQB1P01920 261 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 OR4F5Q8NH21 305 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 NPFFR1Q9GZQ6 430 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 MIXL1Q9H2W2 232 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 GHITMQ9H3K2 345 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 SCPEP1Q9HB40 452 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 NDUFA13Q9P0J0 144 aa14.5□□□□□ -0.09
CLN3-239ENST00000628023 OR8U9P0C7N5 309 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 TMEM11P17152 192 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 RPL39P5Q59GN2 51 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 RNASE12Q5GAN4 147 aaKnown RBP14.49□□□□□ -0.09
CLN3-239ENST00000628023 FAM71F2Q6NXP2 309 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 CCBE1Q6UXH8 406 aaPredicted RBP14.49□□□□□ -0.09
CLN3-239ENST00000628023 ZNF833PQ6ZTB9 187 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 ODF3L1Q8IXM7 274 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 H1FOOQ8IZA3 346 aaPredicted RBP14.49□□□□□ -0.09
CLN3-239ENST00000628023 OR4C13Q8NGP0 309 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 OR8U1Q8NH10 309 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 C15orf40Q8WUR7 153 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 CFHR4Q92496 578 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 DIRAS2Q96HU8 199 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 SLC25A33Q9BSK2 321 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 MRPL20Q9BYC9 149 aaKnown RBP14.49□□□□□ -0.09
CLN3-239ENST00000628023 TOLLIPQ9H0E2 274 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 OR2D2Q9H210 308 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 NECAP2Q9NVZ3 263 aa14.49□□□□□ -0.09
CLN3-239ENST00000628023 NDUFA7O95182 113 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 NFYAP23511 347 aaPredicted RBP14.48□□□□□ -0.09
CLN3-239ENST00000628023 HNF4GQ14541 408 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 C16orf82Q7Z2V1 217 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 THNSL2Q86YJ6 484 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 SNAPC3Q92966 411 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 AGMATQ9BSE5 352 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 BEX1Q9HBH7 125 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 MMP24Q9Y5R2 645 aa14.48□□□□□ -0.09
CLN3-239ENST00000628023 DPPA5A6NC42 116 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 FAM90A9PA6NNJ1 464 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 J3QRK9 145 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 OR2F2O95006 317 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 MDKP21741 143 aaPredicted RBP14.47□□□□□ -0.09
CLN3-239ENST00000628023 CD1BP29016 333 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 TAS2R46P59540 309 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 RELBQ01201 579 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 LSAMPQ13449 338 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 HABP2Q14520 560 aaPredicted RBP14.47□□□□□ -0.09
CLN3-239ENST00000628023 ARSJQ5FYB0 599 aaPredicted RBP14.47□□□□□ -0.09
CLN3-239ENST00000628023 TREML4Q6UXN2 200 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 OR2T10Q8NGZ9 312 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 GPX8Q8TED1 209 aa14.47□□□□□ -0.09
CLN3-239ENST00000628023 RBM14Q96PK6 669 aaKnown RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms