RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 C20orf85Q9H1P6 137 aa10.27□□□□□ -0.77
PNKP-217ENST00000625216 MEGF9Q9H1U4 602 aa10.27□□□□□ -0.77
PNKP-217ENST00000625216 NECAP2Q9NVZ3 263 aa10.27□□□□□ -0.77
PNKP-217ENST00000625216 VPREB3Q9UKI3 123 aa10.27□□□□□ -0.77
PNKP-217ENST00000625216 NUBP2Q9Y5Y2 271 aa10.27□□□□□ -0.77
PNKP-217ENST00000625216 TRAV6A0A075B6T7 132 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 A0A1W2PRD5 423 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 A0A1W2PRF3 423 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 A0A1W2PRM7 423 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 C12orf77C9JDV5 145 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 ARPC1BO15143 372 aaKnown RBP10.26□□□□□ -0.77
PNKP-217ENST00000625216 RBP4P02753 201 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 IFNA6P05013 189 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 OR5H8P0DN80 308 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 ERP29P30040 261 aaKnown RBP10.26□□□□□ -0.77
PNKP-217ENST00000625216 GLP1RP43220 463 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 DLX1P56177 255 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 EDDM3BP56851 147 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 ERVFRD-1P60508 538 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 PRB3Q04118 309 aaPredicted RBP10.26□□□□□ -0.77
PNKP-217ENST00000625216 MEF2CQ06413 473 aaPredicted RBP10.26□□□□□ -0.77
PNKP-217ENST00000625216 RBMS2Q15434 407 aaKnown RBP10.26□□□□□ -0.77
PNKP-217ENST00000625216 HCP5Q6MZN7 132 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 IDO2Q6ZQW0 420 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 MRGPRDQ8TDS7 321 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 TAF15Q92804 592 aaKnown RBP eCLIP10.26□□□□□ -0.77
PNKP-217ENST00000625216 PRRT1Q99946 306 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 MARVELD1Q9BSK0 173 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 TAF9BQ9HBM6 251 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 COPZ2Q9P299 210 aa10.26□□□□□ -0.77
PNKP-217ENST00000625216 C17orf98A8MV24 154 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 INMT-MINDY4F8WBC2 141 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 TSPAN9O75954 239 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 H2AFB2P0C5Z0 115 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 SSTR5P35346 364 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 LGALS4P56470 323 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 RAB25P57735 213 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 C6orf183Q5T699 404 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 AADACL3Q5VUY0 350 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 PNKDQ8N490 385 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 OR4A4PQ8NGN8 299 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 OR1L1Q8NH94 360 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 LINC01006Q8NI28 216 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 WFDC12Q8WWY7 111 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 CREB3L1Q96BA8 519 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 KIRREL1Q96J84 757 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 C16orf95Q9H693 158 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 OR1A1Q9P1Q5 309 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 SCP2D1Q9UJQ7 156 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 MGAT4AQ9UM21 535 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 VSIG4Q9Y279 399 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 RNF114Q9Y508 228 aa10.25□□□□□ -0.77
PNKP-217ENST00000625216 hADV38S2A0JD32 116 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 OR5H14A6NHG9 310 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 C15orf65H3BRN8 121 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 BET1O15155 118 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 ZNF728P0DKX0 622 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 CGB3P0DN86 165 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 CGB7P0DN87 165 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 CCL3L1P16619 93 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 AADACP22760 399 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 DLX6P56179 175 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 TSPAN5P62079 268 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 ZNF273Q14593 569 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 DHRS7BQ6IAN0 325 aaPredicted RBP10.24□□□□□ -0.77
PNKP-217ENST00000625216 FAM53AQ6NSI3 398 aaPredicted RBP10.24□□□□□ -0.77
PNKP-217ENST00000625216 PRR18Q8N4B5 295 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 OR13D1Q8NGV5 346 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 MARCH1Q8TCQ1 289 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 SSX3Q99909 188 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 ZNF2Q9BSG1 426 aaPredicted RBP10.24□□□□□ -0.77
PNKP-217ENST00000625216 NCOR1P1Q9H4R4 102 aa10.24□□□□□ -0.77
PNKP-217ENST00000625216 TRRAPQ9Y4A5 3859 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TRBV6-7A0A0A0MS04 114 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 FUOMA2VDF0 154 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 NPIPB11E5RHQ5 1161 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TUSC2O75896 110 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 HBZP02008 142 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 VSIG10L2P0DP72 767 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 ANXA7P20073 488 aaKnown RBP10.23□□□□□ -0.77
PNKP-217ENST00000625216 NFYAP23511 347 aaPredicted RBP10.23□□□□□ -0.77
PNKP-217ENST00000625216 FCGR2CP31995 323 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 GNMTQ14749 295 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TATDN3Q17R31 274 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TRAT1Q6PIZ9 186 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 Q6ZSV7 163 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TMEM17Q86X19 198 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 H1FOOQ8IZA3 346 aaPredicted RBP10.23□□□□□ -0.77
PNKP-217ENST00000625216 TERB2Q8NHR7 220 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 AJUBAQ96IF1 538 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 CITED1Q99966 193 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 SLC25A21Q9BQT8 299 aaPredicted RBP10.23□□□□□ -0.77
PNKP-217ENST00000625216 RAB18Q9NP72 206 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 CALYQ9NYX4 217 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 KCNIP1Q9NZI2 227 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 OR6C3Q9NZP0 311 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 TBL2Q9Y4P3 447 aaKnown RBP10.23□□□□□ -0.77
PNKP-217ENST00000625216 LINC00312Q9Y6C7 94 aa10.23□□□□□ -0.77
PNKP-217ENST00000625216 H3BUX3 64 aa10.22□□□□□ -0.77
PNKP-217ENST00000625216 TIMM23O14925 209 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms