RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SRRM5B3KS81 715 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 FAM157AC9JC47 383 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 DEGS1O15121 323 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 PITX3O75364 302 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 NKX2-1P43699 371 aaPredicted RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 ZNF146Q15072 292 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 PDCD1Q15116 288 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 PEA15Q15121 130 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 HFEQ30201 348 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 NMSQ5H8A3 153 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 BRICD5Q6PL45 260 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 Q6ZRG5 221 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 TBC1D26Q86UD7 250 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 FAM219AQ8IW50 185 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 OR2C3Q8N628 320 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 OR52M1Q8NGK5 317 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 OR11L1Q8NGX0 322 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 PLEKHF2Q9H8W4 249 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SAP30LQ9HAJ7 183 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 CBLN4Q9NTU7 201 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 RNF7Q9UBF6 113 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 UBE2J1Q9Y385 318 aaPredicted RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 PKDREJQ9NTG1 2253 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 BTBD17A6NE02 478 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 LRRC30A6NM36 301 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SH2D1BO14796 132 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 WNT9BO14905 357 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 NUPL2O15504 423 aaKnown RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 TSPAN9O75954 239 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 TSPAN15O95858 294 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SFTA3P0C7M3 94 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 IRF2P14316 349 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SNCAP37840 140 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SRSF3P84103 164 aaKnown RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 ID3Q02535 119 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 ACP7Q6ZNF0 438 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 FAM90A1Q86YD7 464 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 SELENOHQ8IZQ5 122 aaKnown RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 GAPTQ8N292 157 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 BOLLQ8N9W6 283 aaKnown RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 KIRREL1Q96J84 757 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 LYRM2Q9NU23 88 aaPredicted RBP9.78□□□□□ -0.84
VRK3-223ENST00000601341 PRELID1Q9Y255 219 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 PRELID3BQ9Y3B1 194 aa9.78□□□□□ -0.84
VRK3-223ENST00000601341 LHBP01229 141 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 ZNF44P15621 663 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 PPOXP50336 477 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 AKR1C2P52895 323 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 EWSR1Q01844 656 aaKnown RBP eCLIP9.77□□□□□ -0.85
VRK3-223ENST00000601341 AKR1C1Q04828 323 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 HERPUD1Q15011 391 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 GCSAMQ8N6F7 178 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 SUMF2Q8NBJ7 301 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 MRPL30Q8TCC3 161 aaKnown RBP9.77□□□□□ -0.85
VRK3-223ENST00000601341 PBDC1Q9BVG4 233 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 CACFD1Q9UGQ2 172 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 OR2W1Q9Y3N9 320 aa9.77□□□□□ -0.85
VRK3-223ENST00000601341 A0A1W2PPR1 153 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 C3orf80F5H4A9 247 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 J3QKU1 62 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 IFNL4K9M1U5 179 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 HSPA12AO43301 675 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 NDUFA2O43678 99 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 SCTP09683 121 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 PLA2G2AP14555 144 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 HLA-DRB3P79483 266 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 Q6P435 159 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 ZNF818PQ6ZRF7 136 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 DTX2Q86UW9 622 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 H1FOOQ8IZA3 346 aaPredicted RBP9.76□□□□□ -0.85
VRK3-223ENST00000601341 SECTM1Q8WVN6 248 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 AKR1E2Q96JD6 320 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 TUBA4BQ9H853 241 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 PLA2G2EQ9NZK7 142 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 OR14J1Q9UGF5 321 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 COL12A1Q99715 3063 aa9.76□□□□□ -0.85
VRK3-223ENST00000601341 TRAV24A0A0B4J272 114 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 A0A1B0GU03 582 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.75□□□□□ -0.85
VRK3-223ENST00000601341 OR2H2O95918 312 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 HAND1O96004 215 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 SOD3P08294 240 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 EGR1P18146 543 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 F2RP25116 425 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 ARHGDIBP52566 201 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 DPPA3Q6W0C5 159 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 C1orf87Q8N0U7 546 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 OR10J5Q8NHC4 309 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 NEK7Q8TDX7 302 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 LSM10Q969L4 123 aaKnown RBP9.75□□□□□ -0.85
VRK3-223ENST00000601341 GNPNAT1Q96EK6 184 aaPredicted RBP9.75□□□□□ -0.85
VRK3-223ENST00000601341 SCRT1Q9BWW7 348 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 SMIM3Q9BZL3 60 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 RAB1BQ9H0U4 201 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 UBTD1Q9HAC8 227 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 SEBOXQ9HB31 216 aaPredicted RBP9.75□□□□□ -0.85
VRK3-223ENST00000601341 WFDC1Q9HC57 220 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 SMCO4Q9NRQ5 59 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 IGKV1-6A0A0C4DH72 117 aa9.75□□□□□ -0.85
VRK3-223ENST00000601341 K7N7A8 449 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms