RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-206	ENST00000600289	HES1	Q14469	280 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	PNLIPRP3	Q17RR3	467 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	ABCA11P	Q4W5N1	156 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	IDNK	Q5T6J7	187 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	HACD4	Q5VWC8	232 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	SLC25A38	Q96DW6	304 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	NABP2	Q9BQ15	211 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	ZNF251	Q9BRH9	671 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	FUNDC2	Q9BWH2	189 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	OR1A1	Q9P1Q5	309 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	SPATA2	Q9UM82	520 aa		12.86	□□□□□ -0.35
LSM4-206	ENST00000600289	TRBV6-7	A0A0A0MS04	114 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	RAB29	O14966	203 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	MOS	P00540	346 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	VSIG10L2	P0DP72	767 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	TGFBR1	P36897	503 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	RPS19	P39019	145 aa	Known RBP	12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	CEACAM6	P40199	344 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	PITPNA	Q00169	270 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	ARFRP1	Q13795	201 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	ZNF260	Q3ZCT1	412 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	CDNF	Q49AH0	187 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	OR5H6	Q8NGV6	325 aa		12.85	□□□□□ -0.35
LSM4-206	ENST00000600289	C11orf54	Q9H0W9	315 aa	Predicted RBP	12.85	□□□□□ -0.35
LSM4-206	ENST00000600289		A0A075B6Q4	140 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	IGHV3-72	A0A0B4J1Y9	119 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	ST8SIA5	O15466	376 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	HSPA12A	O43301	675 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	TALDO1	P37837	337 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	ARSJ	Q5FYB0	599 aa	Predicted RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	KCTD12	Q96CX2	325 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	S1PR3	Q99500	378 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	MRPL20	Q9BYC9	149 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	MRPS26	Q9BYN8	205 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	PARP12	Q9H0J9	701 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	DCSTAMP	Q9H295	470 aa		12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	LIN7C	Q9NUP9	197 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-206	ENST00000600289	ZNF736	B4DX44	427 aa	Predicted RBP	12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	GSTT2	P0CG29	244 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	GSTT2B	P0CG30	244 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	OR3A3	P47888	321 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	LSM3	P62310	102 aa	Known RBP	12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	C2orf68	Q2NKX9	166 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	TMEM95	Q3KNT9	176 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	ANKRD13B	Q86YJ7	626 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	SLC25A46	Q96AG3	418 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	ABCG5	Q9H222	651 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	PLSCR3	Q9NRY6	295 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	RDH8	Q9NYR8	311 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	GAB2	Q9UQC2	676 aa		12.83	□□□□□ -0.36
LSM4-206	ENST00000600289	TMEM235	A6NFC5	223 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	PEX14	O75381	377 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	FBXO24	O75426	580 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	GABARAP	O95166	117 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	IGHG2	P01859	326 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	ALDH3B2	P48448	385 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	HNF4G	Q14541	408 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	IGSF11	Q5DX21	431 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	FAM71E2	Q8N5Q1	922 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289		Q8N9W7	124 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	OR10J5	Q8NHC4	309 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	PHF21A	Q96BD5	680 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	ABHD14B	Q96IU4	210 aa		12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	ZNF230	Q9UIE0	474 aa	Predicted RBP	12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	ELF5	Q9UKW6	265 aa	Predicted RBP	12.82	□□□□□ -0.36
LSM4-206	ENST00000600289	OR5H14	A6NHG9	310 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	SSX5	O60225	188 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	GNG2	P59768	71 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	NCS1	P62166	190 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	UBE2NL	Q5JXB2	153 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	NUDCD2	Q8WVJ2	157 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	MMP27	Q9H306	513 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	DIABLO	Q9NR28	239 aa		12.81	□□□□□ -0.36
LSM4-206	ENST00000600289	IGKV1D-8	A0A087WSZ0	117 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	SH2D7	A6NKC9	451 aa	Predicted RBP	12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	BET1	O15155	118 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	PROP1	O75360	226 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	TFAP2A	P05549	437 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CTXN2	P0C2S0	81 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CT45A6	P0DMU7	189 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CT45A5	P0DMU8	189 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CT45A7	P0DMV0	189 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	MC5R	P33032	325 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CTF1	Q16619	201 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	RPL39P5	Q59GN2	51 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	OR5AN1	Q8NGI8	311 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	MAFIP	Q8WZ33	124 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	CMTM3	Q96MX0	182 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	ZNF580	Q9UK33	172 aa		12.8	□□□□□ -0.36
LSM4-206	ENST00000600289	NCBP2L	A6PVI3	153 aa	Known RBP	12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	XRCC3	O43542	346 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	CD28	P10747	220 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	GPR12	P47775	334 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	F2RL1	P55085	397 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	VBP1	P61758	197 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	C9orf152	Q5JTZ5	239 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	NDUFA11	Q86Y39	141 aa		12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	H1FOO	Q8IZA3	346 aa	Predicted RBP	12.79	□□□□□ -0.36
LSM4-206	ENST00000600289	NPB	Q8NG41	125 aa		12.79	□□□□□ -0.36

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