RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 C11orf54Q9H0W9 315 aaPredicted RBP12.13□□□□□ -0.47
LIG1-219ENST00000600055 SERTAD4Q9NUC0 356 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 SMIM31A0A1B0GVY4 71 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 PTHLHP12272 177 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 DTYMKP23919 212 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 CD1BP29016 333 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 GNG2P59768 71 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 EBI3Q14213 229 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 KIR2DS1Q14954 304 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 ABCA11PQ4W5N1 156 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 RPL39P5Q59GN2 51 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 ZNF833PQ6ZTB9 187 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 PHF21AQ96BD5 680 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 EAF1Q96JC9 268 aaPredicted RBP12.12□□□□□ -0.47
LIG1-219ENST00000600055 AKR1E2Q96JD6 320 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 CITED1Q99966 193 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 AGMATQ9BSE5 352 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 CABLES2Q9BTV7 478 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 ST6GALNAC5Q9BVH7 336 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 RDH8Q9NYR8 311 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 RNF150Q9ULK6 438 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 MOB4Q9Y3A3 225 aa12.12□□□□□ -0.47
LIG1-219ENST00000600055 CCDC160A6NGH7 325 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 ITGB1BP1O14713 200 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 TXNL1O43396 289 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 LPLP06858 475 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 VSIG10L2P0DP72 767 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 LSAMPQ13449 338 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 SRSF7Q16629 238 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIG1-219ENST00000600055 PNLIPRP3Q17RR3 467 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 ARSJQ5FYB0 599 aaPredicted RBP12.11□□□□□ -0.47
LIG1-219ENST00000600055 Q8N6K4 173 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 KLHDC1Q8N7A1 406 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 SAMD12Q8N8I0 201 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 NABP2Q9BQ15 211 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 ZNF251Q9BRH9 671 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 ABCG5Q9H222 651 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 DIABLOQ9NR28 239 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 BATF3Q9NR55 127 aa12.11□□□□□ -0.47
LIG1-219ENST00000600055 TRBV6-7A0A0A0MS04 114 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 A0A0A6YYH2 397 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 A6NJ64 397 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 ZNF701M0R085 212 aaPredicted RBP12.1□□□□□ -0.47
LIG1-219ENST00000600055 RAB29O14966 203 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 C9orf152Q5JTZ5 239 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 UBE2NLQ5JXB2 153 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 Q6ZS49 121 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 C5orf56Q8N8D9 126 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 C11orf44Q8N8P7 122 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 OR2T10Q8NGZ9 312 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 OR10J5Q8NHC4 309 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 EDARADDQ8WWZ3 215 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 TOLLIPQ9H0E2 274 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 DCSTAMPQ9H295 470 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 AUNIPQ9H7T9 357 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 PIPOXQ9P0Z9 390 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 COMMD3Q9UBI1 195 aa12.1□□□□□ -0.47
LIG1-219ENST00000600055 XRCC3O43542 346 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 PROP1O75360 226 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 MOSP00540 346 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 EIF4EP06730 217 aaKnown RBP12.09□□□□□ -0.47
LIG1-219ENST00000600055 VDAC2P45880 294 aaPredicted RBP12.09□□□□□ -0.47
LIG1-219ENST00000600055 PITPNAQ00169 270 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 C11orf88Q6PI97 169 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 GLDNQ6ZMI3 551 aaPredicted RBP12.09□□□□□ -0.47
LIG1-219ENST00000600055 GVQW1Q8N7I0 195 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 KCTD12Q96CX2 325 aaKnown RBP12.09□□□□□ -0.47
LIG1-219ENST00000600055 S100A16Q96FQ6 103 aaKnown RBP12.09□□□□□ -0.47
LIG1-219ENST00000600055 RITA1Q96K30 269 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 PLSCR3Q9NRY6 295 aa12.09□□□□□ -0.47
LIG1-219ENST00000600055 NCBP2LA6PVI3 153 aaKnown RBP12.08□□□□□ -0.48
LIG1-219ENST00000600055 M0QZK8 103 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 FCER2P06734 321 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 OR8U9P0C7N5 309 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 CT45A6P0DMU7 189 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 CT45A5P0DMU8 189 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 CT45A7P0DMV0 189 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 SOX6P35712 828 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 RORCP51449 518 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 F2RL1P55085 397 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 LINC00205P59089 165 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 SPCS2Q15005 226 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 Q8N9W7 124 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 OR8U1Q8NH10 309 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 DGCR14Q96DF8 476 aaKnown RBP12.08□□□□□ -0.48
LIG1-219ENST00000600055 S1PR3Q99500 378 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 GINS4Q9BRT9 223 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 WNT10AQ9GZT5 417 aa12.08□□□□□ -0.48
LIG1-219ENST00000600055 RSL24D1Q9UHA3 163 aaKnown RBP12.08□□□□□ -0.48
LIG1-219ENST00000600055 MEIS3P1A6NDR6 274 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 FGF16O43320 207 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 HPGDSO60760 199 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 DIRAS3O95661 229 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 CNTFRP26992 372 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 GPR12P47775 334 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 TAS2R20P59543 309 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 FAM71F2Q6NXP2 309 aa12.07□□□□□ -0.48
LIG1-219ENST00000600055 H1FOOQ8IZA3 346 aaPredicted RBP12.07□□□□□ -0.48
LIG1-219ENST00000600055 DRAXINQ8NBI3 349 aaPredicted RBP12.07□□□□□ -0.48
LIG1-219ENST00000600055 SGMS2Q8NHU3 365 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms