RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IGHG2P01859 326 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 DTYMKP23919 212 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 TGFBR1P36897 503 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 KIR2DS1Q14954 304 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 OR8H1Q8NGG4 311 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 OR13F1Q8NGS4 319 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 MRPL20Q9BYC9 149 aaKnown RBP12.79□□□□□ -0.36
TRIM28-213ENST00000598355 MMP27Q9H306 513 aa12.79□□□□□ -0.36
TRIM28-213ENST00000598355 LIN7CQ9NUP9 197 aaKnown RBP12.79□□□□□ -0.36
TRIM28-213ENST00000598355 RAB29O14966 203 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 GSTP1P09211 210 aaKnown RBP12.78□□□□□ -0.36
TRIM28-213ENST00000598355 OR3A3P47888 321 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 SERPINB10P48595 397 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 ZNF260Q3ZCT1 412 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 HACD4Q5VWC8 232 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 OR5H6Q8NGV6 325 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 C11orf54Q9H0W9 315 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-213ENST00000598355 ABCG5Q9H222 651 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 ELF5Q9UKW6 265 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-213ENST00000598355 SPATA2Q9UM82 520 aa12.78□□□□□ -0.36
TRIM28-213ENST00000598355 NOTCH1P46531 2555 aa12.77□□□□□ -0.36
TRIM28-213ENST00000598355 TRBV6-7A0A0A0MS04 114 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 A0A0A6YYH2 397 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 A6NJ64 397 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 PROP1O75360 226 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 CD28P10747 220 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 MRPS15P82914 257 aaKnown RBP12.77□□□□□ -0.37
TRIM28-213ENST00000598355 CD83Q01151 205 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 HNF4GQ14541 408 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 ARSJQ5FYB0 599 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-213ENST00000598355 CROCCP3Q8IVE0 287 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 FUNDC2Q9BWH2 189 aa12.77□□□□□ -0.37
TRIM28-213ENST00000598355 A0A075B6Q4 140 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 IGKV1D-8A0A087WSZ0 117 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 TMEM235A6NFC5 223 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 HSPA12AO43301 675 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 RPS19P39019 145 aaKnown RBP12.76□□□□□ -0.37
TRIM28-213ENST00000598355 CEACAM6P40199 344 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 ARFRP1Q13795 201 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 PNLIPRP3Q17RR3 467 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 CDNFQ49AH0 187 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 RPL39P5Q59GN2 51 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 IGSF11Q5DX21 431 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 TCTEX1D4Q5JR98 221 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 IDNKQ5T6J7 187 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 HIST2H2BDQ6DRA6 164 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 NDUFA11Q86Y39 141 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 C11orf44Q8N8P7 122 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 ABHD14BQ96IU4 210 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 S1PR3Q99500 378 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 DCSTAMPQ9H295 470 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 RDH8Q9NYR8 311 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 ZNF230Q9UIE0 474 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-213ENST00000598355 ZNF580Q9UK33 172 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 MEGF8Q7Z7M0 2845 aa12.76□□□□□ -0.37
TRIM28-213ENST00000598355 OR5H14A6NHG9 310 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 SSX5O60225 188 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 PEX14O75381 377 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 NDUFA3O95167 84 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 CSF1P09603 554 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 GSTT2P0CG29 244 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 GSTT2BP0CG30 244 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 CT45A6P0DMU7 189 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 CT45A5P0DMU8 189 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 CT45A7P0DMV0 189 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 F2RL1P55085 397 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 PITPNAQ00169 270 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-213ENST00000598355 OR5AU1Q8NGC0 362 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 OR5AN1Q8NGI8 311 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 MAFIPQ8WZ33 124 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 RBMXL1Q96E39 390 aaKnown RBP12.75□□□□□ -0.37
TRIM28-213ENST00000598355 CITED2Q99967 270 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-213ENST00000598355 GAB2Q9UQC2 676 aa12.75□□□□□ -0.37
TRIM28-213ENST00000598355 H0YJW9 148 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 GABARAPO95166 117 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 GPR12P47775 334 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 C10orf99Q6UWK7 81 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 SLC35E3Q7Z769 313 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 H1FOOQ8IZA3 346 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-213ENST00000598355 NPBQ8NG41 125 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 NUDCD2Q8WVJ2 157 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 SLC25A46Q96AG3 418 aa12.74□□□□□ -0.37
TRIM28-213ENST00000598355 NCBP2LA6PVI3 153 aaKnown RBP12.73□□□□□ -0.37
TRIM28-213ENST00000598355 ACTBP60709 375 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 NCS1P62166 190 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 LSM3P62310 102 aaKnown RBP12.73□□□□□ -0.37
TRIM28-213ENST00000598355 MMDQ15546 238 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 C9orf152Q5JTZ5 239 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 FAM131AQ6UXB0 335 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 OR10J5Q8NHC4 309 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 CHPT1Q8WUD6 406 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 PHF21AQ96BD5 680 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 KCTD12Q96CX2 325 aaKnown RBP12.73□□□□□ -0.37
TRIM28-213ENST00000598355 C5orf30Q96GV9 206 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 HSPB9Q9BQS6 159 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 NOTCH3Q9UM47 2321 aa12.73□□□□□ -0.37
TRIM28-213ENST00000598355 AP4M1O00189 453 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 BET1O15155 118 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 KCNAB3O43448 404 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms