RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PPP1CCP36873 323 aaKnown RBP9.73□□□□□ -0.85
TRIM28-212ENST00000597995 HTD2P86397 168 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 PLA2G7Q13093 441 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 KIAA0141Q14154 515 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-212ENST00000597995 HMGN3Q15651 99 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF880Q6PDB4 577 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 TMEM65Q6PI78 240 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 TRAT1Q6PIZ9 186 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF554Q86TJ5 538 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 FAM89BQ8N5H3 189 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF491Q8N8L2 437 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 RCHY1Q96PM5 261 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 NEDD4LQ96PU5 975 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 HDHD3Q9BSH5 251 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-212ENST00000597995 OR2S2Q9NQN1 319 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF107Q9UII5 783 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-212ENST00000597995 VSIG4Q9Y279 399 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 TENM2Q9NT68 2774 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 LDLRAD4O15165 306 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 LANCL1O43813 399 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 LY86O95711 162 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 CALRP27797 417 aaKnown RBP9.72□□□□□ -0.85
TRIM28-212ENST00000597995 BLVRBP30043 206 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-212ENST00000597995 HSPA13P48723 471 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 TMEM50BP56557 158 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 CLDN12P56749 244 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF616Q08AN1 781 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 TRAM1Q15629 374 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 TBCEQ15813 527 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-212ENST00000597995 ASPHD1Q5U4P2 390 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 SBSPONQ8IVN8 264 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 SVOPQ8N4V2 548 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 RITA1Q96K30 269 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 KLK15Q9H2R5 256 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 VCX3BQ9H321 246 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 ACOT13Q9NPJ3 140 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 KCNIP1Q9NZI2 227 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 JPT1Q9UK76 154 aa9.72□□□□□ -0.85
TRIM28-212ENST00000597995 YPEL1O60688 119 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 ATP6V1G2O95670 118 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 IGLV1-40P01703 118 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 ARSBP15848 533 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 PSMA1P25786 263 aaKnown RBP9.71□□□□□ -0.86
TRIM28-212ENST00000597995 LSAMPQ13449 338 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 LY6G6FQ5SQ64 297 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 YPEL2Q96QA6 119 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 ABHD14AQ9BUJ0 271 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 PARP12Q9H0J9 701 aaKnown RBP9.71□□□□□ -0.86
TRIM28-212ENST00000597995 GNB4Q9HAV0 340 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 PLGRKTQ9HBL7 147 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 AK3Q9UIJ7 227 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 RAB26Q9ULW5 256 aa9.71□□□□□ -0.86
TRIM28-212ENST00000597995 DYNC2H1Q8NCM8 4307 aaKnown RBP9.71□□□□□ -0.86
TRIM28-212ENST00000597995 TRBV6-6A0A0A6YYG2 114 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 OVOL1O14753 267 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 ARL6IP5O75915 188 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 HLA-DRB1P01911 266 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 SLC2A2P11168 524 aaPredicted RBP9.7□□□□□ -0.86
TRIM28-212ENST00000597995 LYL1P12980 280 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 OR3A3P47888 321 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 RAB9AP51151 201 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 OR10A3P58181 314 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 GNB1P62873 340 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 MMDQ15546 238 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 RAB11BQ15907 218 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 C2orf76Q3KRA6 126 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 PLAC9Q5JTB6 97 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 CD200R1LQ6Q8B3 271 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 ZNF367Q7RTV3 350 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 DCUN1D4Q92564 292 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 FAM3DQ96BQ1 224 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 GALMQ96C23 342 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 NABP2Q9BQ15 211 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 MRPL20Q9BYC9 149 aaKnown RBP9.7□□□□□ -0.86
TRIM28-212ENST00000597995 IFI27L2Q9H2X8 130 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 OR51J1Q9H342 316 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 PLEKHJ1Q9NW61 149 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 WSB1Q9Y6I7 421 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 V9GY05 133 aa9.7□□□□□ -0.86
TRIM28-212ENST00000597995 G3V318 75 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ATP6V0E1O15342 81 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 CNTFRP26992 372 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 VEGFCP49767 419 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ACTBP60709 375 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 HES5Q5TA89 166 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ZNF833PQ6ZTB9 187 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 NR2C2APQ86WQ0 139 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 MINDY2Q8NBR6 621 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 DNAH7Q8WXX0 4024 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ARHGAP5-AS1Q96IT6 56 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ZNF251Q9BRH9 671 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 PECRQ9BY49 303 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 ZMAT4Q9H898 229 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 NDUFB11Q9NX14 153 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 HSF4Q9ULV5 492 aa9.69□□□□□ -0.86
TRIM28-212ENST00000597995 SACSQ9NZJ4 4579 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 SAA2-SAA4A0A096LPE2 208 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 IGHV7-81A0A0B4J1V7 117 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 TRAV1-2A0A0B4J238 106 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 TRAV41A0A0B4J266 112 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms