RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 BET1O15155 118 aa12□□□□□ -0.49
UPF1-202ENST00000594243 ST8SIA5O15466 376 aa12□□□□□ -0.49
UPF1-202ENST00000594243 HNF4GQ14541 408 aa12□□□□□ -0.49
UPF1-202ENST00000594243 ZNF833PQ6ZTB9 187 aa12□□□□□ -0.49
UPF1-202ENST00000594243 SAMD12Q8N8I0 201 aa12□□□□□ -0.49
UPF1-202ENST00000594243 SGMS2Q8NHU3 365 aa12□□□□□ -0.49
UPF1-202ENST00000594243 MAFIPQ8WZ33 124 aa12□□□□□ -0.49
UPF1-202ENST00000594243 EAF1Q96JC9 268 aaPredicted RBP12□□□□□ -0.49
UPF1-202ENST00000594243 CMTM3Q96MX0 182 aa12□□□□□ -0.49
UPF1-202ENST00000594243 AGMATQ9BSE5 352 aa12□□□□□ -0.49
UPF1-202ENST00000594243 CABLES2Q9BTV7 478 aa12□□□□□ -0.49
UPF1-202ENST00000594243 NAA50Q9GZZ1 169 aaKnown RBP12□□□□□ -0.49
UPF1-202ENST00000594243 TOLLIPQ9H0E2 274 aa12□□□□□ -0.49
UPF1-202ENST00000594243 C11orf54Q9H0W9 315 aaPredicted RBP12□□□□□ -0.49
UPF1-202ENST00000594243 RDH8Q9NYR8 311 aa12□□□□□ -0.49
UPF1-202ENST00000594243 SIGLEC9Q9Y336 463 aa12□□□□□ -0.49
UPF1-202ENST00000594243 MOB4Q9Y3A3 225 aa12□□□□□ -0.49
UPF1-202ENST00000594243 SAA2-SAA4A0A096LPE2 208 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 TRBV6-7A0A0A0MS04 114 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 IGHV3-72A0A0B4J1Y9 119 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 FGF16O43320 207 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 XRCC3O43542 346 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 PEX14O75381 377 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 MOSP00540 346 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 CTXN2P0C2S0 81 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 SAA2P0DJI9 122 aaPredicted RBP11.99□□□□□ -0.49
UPF1-202ENST00000594243 RPL5P46777 297 aaKnown RBP11.99□□□□□ -0.49
UPF1-202ENST00000594243 HERPUD1Q15011 391 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 ABCA11PQ4W5N1 156 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 FBLN7Q53RD9 439 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 IGSF11Q5DX21 431 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 CITED1Q99966 193 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 GINS4Q9BRT9 223 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 IFI27L2Q9H2X8 130 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 COMMD3Q9UBI1 195 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 ZNF221Q9UK13 617 aa11.99□□□□□ -0.49
UPF1-202ENST00000594243 TENM1Q9UKZ4 2725 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 OR3A3P47888 321 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 MZT2AQ6P582 158 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 OR8H1Q8NGG4 311 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 NUDCD2Q8WVJ2 157 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 AP3S1Q92572 193 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 ABHD14BQ96IU4 210 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 NABP2Q9BQ15 211 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 AUNIPQ9H7T9 357 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 SERTAD4Q9NUC0 356 aa11.98□□□□□ -0.49
UPF1-202ENST00000594243 SMIM31A0A1B0GVY4 71 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 NCBP2LA6PVI3 153 aaKnown RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 ZNF736B4DX44 427 aaPredicted RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 SSX5O60225 188 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 AMY1AP04745 511 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 AMY2AP04746 511 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 VSIG10L2P0DP72 767 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 ZNF182P17025 639 aaPredicted RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 VDAC2P45880 294 aaPredicted RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 CBX5P45973 191 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 GPR12P47775 334 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 TMBIM6P55061 237 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 KRTAP10-3P60369 221 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 LSAMPQ13449 338 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 CNIH2Q6PI25 160 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 Q6ZS46 218 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 CLVS1Q8IUQ0 354 aaPredicted RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 Q8N6K4 173 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 C5orf56Q8N8D9 126 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 RAB2BQ8WUD1 216 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 BCL7BQ9BQE9 202 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 ZNF251Q9BRH9 671 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 MRPL20Q9BYC9 149 aaKnown RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 PARP12Q9H0J9 701 aaKnown RBP11.97□□□□□ -0.49
UPF1-202ENST00000594243 SCOCQ9UIL1 159 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 RNF150Q9ULK6 438 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 GAB2Q9UQC2 676 aa11.97□□□□□ -0.49
UPF1-202ENST00000594243 IGKV1D-8A0A087WSZ0 117 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 APOA1P02647 267 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 OR8U9P0C7N5 309 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 MC5RP33032 325 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 SOX6P35712 828 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 SRSF4Q08170 494 aaKnown RBP11.96□□□□□ -0.49
UPF1-202ENST00000594243 RPL39P5Q59GN2 51 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 C9orf152Q5JTZ5 239 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 TMEM69Q5SWH9 247 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 KLHDC1Q8N7A1 406 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.96□□□□□ -0.49
UPF1-202ENST00000594243 OR8U1Q8NH10 309 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 ANXA10Q9UJ72 324 aa11.96□□□□□ -0.49
UPF1-202ENST00000594243 RBM7Q9Y580 266 aaKnown RBP11.96□□□□□ -0.49
UPF1-202ENST00000594243 OR5H14A6NHG9 310 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 CT45A6P0DMU7 189 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 CT45A5P0DMU8 189 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 CT45A7P0DMV0 189 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 HOGA1Q86XE5 327 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 H1FOOQ8IZA3 346 aaPredicted RBP11.95□□□□□ -0.5
UPF1-202ENST00000594243 BEST4Q8NFU0 473 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 RASL11BQ9BPW5 248 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 WNT10AQ9GZT5 417 aa11.95□□□□□ -0.5
UPF1-202ENST00000594243 LIN7CQ9NUP9 197 aaKnown RBP11.95□□□□□ -0.5
UPF1-202ENST00000594243 NOL3O60936 208 aaKnown RBP11.94□□□□□ -0.5
UPF1-202ENST00000594243 EIF4EP06730 217 aaKnown RBP11.94□□□□□ -0.5
UPF1-202ENST00000594243 TAS2R20P59543 309 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms