RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 OR4A4PQ8NGN8 299 aa15.51■□□□□ 0.07
SS18-209ENST00000578595 RBMXL1Q96E39 390 aaKnown RBP15.51■□□□□ 0.07
SS18-209ENST00000578595 GINS4Q9BRT9 223 aa15.51■□□□□ 0.07
SS18-209ENST00000578595 FUNDC2Q9BWH2 189 aa15.51■□□□□ 0.07
SS18-209ENST00000578595 ELF5Q9UKW6 265 aaPredicted RBP15.51■□□□□ 0.07
SS18-209ENST00000578595 RNF150Q9ULK6 438 aa15.51■□□□□ 0.07
SS18-209ENST00000578595 RBM7Q9Y580 266 aaKnown RBP15.51■□□□□ 0.07
SS18-209ENST00000578595 RAB29O14966 203 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 FGF16O43320 207 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 TSPAN15O95858 294 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 CSF1P09603 554 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 GSTT2P0CG29 244 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 GSTT2BP0CG30 244 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 CD28P10747 220 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 GPR12P47775 334 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 ZNF833PQ6ZTB9 187 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 CROCCP3Q8IVE0 287 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 OR10J5Q8NHC4 309 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 NUDCD2Q8WVJ2 157 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 C11orf54Q9H0W9 315 aaPredicted RBP15.5■□□□□ 0.07
SS18-209ENST00000578595 RDH8Q9NYR8 311 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 ZNF221Q9UK13 617 aa15.5■□□□□ 0.07
SS18-209ENST00000578595 GSTP1P09211 210 aaKnown RBP15.49■□□□□ 0.07
SS18-209ENST00000578595 SCAND1P57086 179 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 MMDQ15546 238 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 IGSF11Q5DX21 431 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 HACD4Q5VWC8 232 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 GLDNQ6ZMI3 551 aaPredicted RBP15.49■□□□□ 0.07
SS18-209ENST00000578595 SLC35E3Q7Z769 313 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 OR5AU1Q8NGC0 362 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 FAM110DQ8TAY7 271 aaPredicted RBP15.49■□□□□ 0.07
SS18-209ENST00000578595 RASL11BQ9BPW5 248 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 NABP2Q9BQ15 211 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 ST6GALNAC5Q9BVH7 336 aa15.49■□□□□ 0.07
SS18-209ENST00000578595 TRAV18A0A075B6X5 111 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 IGKV1-6A0A0C4DH72 117 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 TRIM64CA6NLI5 447 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 H7C2Y5 167 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 SMIM18P0DKX4 95 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 RPS19P39019 145 aaKnown RBP15.48■□□□□ 0.07
SS18-209ENST00000578595 VBP1P61758 197 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 NCS1P62166 190 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 EBI3Q14213 229 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 FAM131AQ6UXB0 335 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 SLC25A38Q96DW6 304 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 ZNF251Q9BRH9 671 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 MRPS26Q9BYN8 205 aaKnown RBP15.48■□□□□ 0.07
SS18-209ENST00000578595 DIABLOQ9NR28 239 aa15.48■□□□□ 0.07
SS18-209ENST00000578595 A0A1W2PRX2 142 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 DTYMKP23919 212 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 PITPNAQ00169 270 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 FAM71F2Q6NXP2 309 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 FOXRED2Q8IWF2 684 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 Q8N6K4 173 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 OR4X2Q8NGF9 303 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 OR13F1Q8NGS4 319 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 CITED2Q99967 270 aaPredicted RBP15.47■□□□□ 0.07
SS18-209ENST00000578595 CABLES2Q9BTV7 478 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 WNT10AQ9GZT5 417 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 MMP27Q9H306 513 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.47■□□□□ 0.07
SS18-209ENST00000578595 LINC00527Q9UJ94 153 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 SPATA2Q9UM82 520 aa15.47■□□□□ 0.07
SS18-209ENST00000578595 ITGB1BP1O14713 200 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 OR8U9P0C7N5 309 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 ACTBP60709 375 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 ZNF260Q3ZCT1 412 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 Q8N9W7 124 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 DRAXINQ8NBI3 349 aaPredicted RBP15.46■□□□□ 0.07
SS18-209ENST00000578595 OR8H1Q8NGG4 311 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 OR8U1Q8NH10 309 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 NOL4LQ96MY1 436 aaPredicted RBP15.46■□□□□ 0.07
SS18-209ENST00000578595 OR2D2Q9H210 308 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 LIN7CQ9NUP9 197 aaKnown RBP15.46■□□□□ 0.07
SS18-209ENST00000578595 KIAA1456Q9P272 454 aa15.46■□□□□ 0.07
SS18-209ENST00000578595 PLXNB1O43157 2135 aa15.46■□□□□ 0.06
SS18-209ENST00000578595 PSMB11A5LHX3 300 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 J3QRK9 145 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 M0R1X1 148 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 F2RL1P55085 397 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 PNLIPRP3Q17RR3 467 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 UBE2NLQ5JXB2 153 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 SAMD12Q8N8I0 201 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 GHITMQ9H3K2 345 aa15.45■□□□□ 0.06
SS18-209ENST00000578595 VWFP04275 2813 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 IGKV1D-8A0A087WSZ0 117 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 TCRBV4S1A1TA0A5B7 111 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 OR5H14A6NHG9 310 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 TMEM127O75204 238 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 PLGLAQ15195 96 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 GPR107Q5VW38 600 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 GPR141Q7Z602 305 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 S100A16Q96FQ6 103 aaKnown RBP15.44■□□□□ 0.06
SS18-209ENST00000578595 AGMATQ9BSE5 352 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 WASHC3Q9Y3C0 194 aa15.44■□□□□ 0.06
SS18-209ENST00000578595 TRBV6-7A0A0A0MS04 114 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 A0A0A6YYH2 397 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 A6NJ64 397 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 NBR2O15453 112 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 KCNAB3O43448 404 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms