RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PIPOXQ9P0Z9 390 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 STUB1Q9UNE7 303 aa6.44□□□□□ -1.38
VPS53-214ENST00000572607 TSSC4Q9Y5U2 329 aaPredicted RBP6.44□□□□□ -1.38
VPS53-214ENST00000572607 TRBV6-6A0A0A6YYG2 114 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 TMEM272A0A1B0GTI8 110 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 A6NHS1 94 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 RRP9O43818 475 aaKnown RBP6.43□□□□□ -1.38
VPS53-214ENST00000572607 AMY1AP04745 511 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 AMY2AP04746 511 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 RAB6AP20340 208 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ADMP35318 185 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 TALDO1P37837 337 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ZNF134P52741 427 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 OR10A3P58181 314 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 KIR2DS1Q14954 304 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ARL6IP1Q15041 203 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 FBLN7Q53RD9 439 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 HIST2H2BDQ6DRA6 164 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 FAM71F2Q6NXP2 309 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ZNF880Q6PDB4 577 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ST6GALNAC6Q969X2 333 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 ZNF251Q9BRH9 671 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 GON7Q9BXV9 100 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 PECRQ9BY49 303 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 GHITMQ9H3K2 345 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 TXNL4BQ9NX01 149 aaKnown RBP6.43□□□□□ -1.38
VPS53-214ENST00000572607 KIAA1456Q9P272 454 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 SLC23A1Q9UHI7 598 aa6.43□□□□□ -1.38
VPS53-214ENST00000572607 A0A075B6Q4 140 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 SAA2-SAA4A0A096LPE2 208 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 A0A1W2PRX2 142 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 FOXI3A8MTJ6 420 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 NOTOA8MTQ0 251 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 TRDCB7Z8K6 153 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 AP4M1O00189 453 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 RAB29O14966 203 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 LDLRAD4O15165 306 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 SCGNO76038 276 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 IGHG2P01859 326 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 PF4P02776 101 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 SAA2P0DJI9 122 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 FGF9P31371 208 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 GPR12P47775 334 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 SERPINB10P48595 397 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 CD83Q01151 205 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 LSAMPQ13449 338 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 ARFRP1Q13795 201 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 MMDQ15546 238 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 NEDD8Q15843 81 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 KCTD21Q4G0X4 260 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 KIAA2026Q5HYC2 2103 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 ZNF833PQ6ZTB9 187 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 TPRA1Q86W33 373 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 COMMD1Q8N668 190 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 Q8N6K4 173 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 OR10R2Q8NGX6 335 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 WIPF2Q8TF74 440 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 PTX4Q96A99 478 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 PHF21AQ96BD5 680 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 CYYR1Q96J86 154 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 KCTD7Q96MP8 289 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 HDHD3Q9BSH5 251 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 CENPOQ9BU64 300 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 MRPL20Q9BYC9 149 aaKnown RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 ATG5Q9H1Y0 275 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 ABCG5Q9H222 651 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 IFI27L2Q9H2X8 130 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 Q9N2K0 584 aa6.42□□□□□ -1.38
VPS53-214ENST00000572607 TET2Q6N021 2002 aaPredicted RBP6.42□□□□□ -1.38
VPS53-214ENST00000572607 LOC100506127A0A0U1RQW1 187 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 SHISA3A0PJX4 238 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 OR5H14A6NHG9 310 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 ZNF736B4DX44 427 aaPredicted RBP6.41□□□□□ -1.38
VPS53-214ENST00000572607 ITGB1BP1O14713 200 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 EREGO14944 169 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 SCTP09683 121 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 VDAC1P21796 283 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 MC5RP33032 325 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 SOX6P35712 828 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 CEACAM6P40199 344 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 OR3A3P47888 321 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 TMEM50BP56557 158 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 ACTBP60709 375 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 TIMM50Q3ZCQ8 353 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 PLAC9Q5JTB6 97 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 C5orf24Q7Z6I8 188 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 STPG2Q8N412 459 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 OR4A4PQ8NGN8 299 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 NABP2Q9BQ15 211 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 CHCHD6Q9BRQ6 235 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 OR1A1Q9P1Q5 309 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 DAPK2Q9UIK4 370 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 ZNF221Q9UK13 617 aa6.41□□□□□ -1.38
VPS53-214ENST00000572607 A0A087WXM4 84 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 SMIM30A4D0T7 59 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 NUDT19A8MXV4 375 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 H7C2Y5 167 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 MFNGO00587 321 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 NBR2O15453 112 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 FABP7O15540 132 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms