RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ISYNA1Q9NPH2 558 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 SMAD5-AS1Q9Y6J3 95 aa11.58□□□□□ -0.56
CLN3-236ENST00000568558 RGS11O94810 467 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 HMGN3Q15651 99 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 ACSM3Q53FZ2 586 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 C19orf54Q5BKX5 351 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 LIPKQ5VXJ0 399 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 LIN54Q6MZP7 749 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 ZNF429Q86V71 674 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 MINDY2Q8NBR6 621 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 OR2AK2Q8NG84 335 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 DCUN1D4Q92564 292 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 GALMQ96C23 342 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 KIAA1456Q9P272 454 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 GHRLQ9UBU3 117 aa11.57□□□□□ -0.56
CLN3-236ENST00000568558 OVOL1O14753 267 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 DENRO43583 198 aaKnown RBP11.56□□□□□ -0.56
CLN3-236ENST00000568558 HSMCR30P0CW71 290 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 CRIP2P52943 208 aaPredicted RBP11.56□□□□□ -0.56
CLN3-236ENST00000568558 RPS25P62851 125 aaKnown RBP11.56□□□□□ -0.56
CLN3-236ENST00000568558 NDPQ00604 133 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 FAM71F2Q6NXP2 309 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 THRSPQ92748 146 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 TMEM203Q969S6 136 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 SULT4A1Q9BR01 284 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 CST11Q9H112 138 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 IFI27L2Q9H2X8 130 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 FBXO7Q9Y3I1 522 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 LRRC42Q9Y546 428 aa11.56□□□□□ -0.56
CLN3-236ENST00000568558 RYR2Q92736 4967 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 A0A1W2PN81 502 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 SOX15O60248 233 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 MAPK3P27361 379 aaPredicted RBP11.55□□□□□ -0.56
CLN3-236ENST00000568558 CHRNA7P36544 502 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 TPBGQ13641 420 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 ECSCRQ19T08 205 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 FAM131AQ6UXB0 335 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 UFD1Q92890 307 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 DLX4Q92988 240 aaPredicted RBP11.55□□□□□ -0.56
CLN3-236ENST00000568558 TOLLIPQ9H0E2 274 aa11.55□□□□□ -0.56
CLN3-236ENST00000568558 ALX4Q9H161 411 aaPredicted RBP11.55□□□□□ -0.56
CLN3-236ENST00000568558 LINC01619G3V211 115 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 ST8SIA5O15466 376 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 SAP30O75446 220 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 UBBP0CG47 229 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 CPEP16870 476 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 SLURP1P55000 103 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 MLLT11Q13015 90 aaPredicted RBP11.54□□□□□ -0.56
CLN3-236ENST00000568558 TBCEQ15813 527 aaPredicted RBP11.54□□□□□ -0.56
CLN3-236ENST00000568558 ZNF660Q6AZW8 331 aaPredicted RBP11.54□□□□□ -0.56
CLN3-236ENST00000568558 OR10K2Q6IF99 312 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 TMEM91Q6ZNR0 172 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 C6orf201Q7Z4U5 140 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 CEACAM19Q7Z692 300 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 LRRTM1Q86UE6 522 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 SBSPONQ8IVN8 264 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 SVOPQ8N4V2 548 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 MS4A15Q8N5U1 240 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 TCTEX1D1Q8N7M0 179 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 IL1F10Q8WWZ1 152 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 NEDD4LQ96PU5 975 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 MGLLQ99685 303 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 FAAP24Q9BTP7 215 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 FBXL15Q9H469 300 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 ACOT13Q9NPJ3 140 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 TPSG1Q9NRR2 321 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 PIPOXQ9P0Z9 390 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 ABRACLQ9P1F3 81 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 STEAP1Q9UHE8 339 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 BLOC1S6Q9UL45 172 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 FOXA2Q9Y261 457 aaPredicted RBP11.54□□□□□ -0.56
CLN3-236ENST00000568558 LYSTQ99698 3801 aa11.54□□□□□ -0.56
CLN3-236ENST00000568558 RRHO14718 337 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 RAB29O14966 203 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 NAPSAO96009 420 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 LGALS1P09382 135 aaKnown RBP11.53□□□□□ -0.56
CLN3-236ENST00000568558 CT45A6P0DMU7 189 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 CT45A5P0DMU8 189 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 CT45A7P0DMV0 189 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 SPNP16150 400 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 GABARAPL2P60520 117 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 RPS27AP62979 156 aaKnown RBP11.53□□□□□ -0.56
CLN3-236ENST00000568558 CX3CL1P78423 397 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 SSX1Q16384 188 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 RPL39P5Q59GN2 51 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 ZNF880Q6PDB4 577 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 CASTOR1Q8WTX7 329 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 RCHY1Q96PM5 261 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 TMEM59Q9BXS4 323 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 Q9H521 79 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 SLC23A1Q9UHI7 598 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 NUBP2Q9Y5Y2 271 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 DNAH1Q9P2D7 4330 aa11.53□□□□□ -0.56
CLN3-236ENST00000568558 IGHV4OR15-8A0A075B7B6 117 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 A0A087WW49 117 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 OR5H14A6NHG9 310 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 UCHL1P09936 223 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 EGR2P11161 476 aaPredicted RBP11.52□□□□□ -0.57
CLN3-236ENST00000568558 GP9P14770 177 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 UNC119Q13432 240 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms