RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CT45A5P0DMU8 189 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 CT45A7P0DMV0 189 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 CNTFRP26992 372 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 EIF4EBP1Q13541 118 aaPredicted RBP7.81□□□□□ -1.16
CLN3-220ENST00000566040 TCTEX1D4Q5JR98 221 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 UBE2NLQ5JXB2 153 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 C11orf88Q6PI97 169 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 H1FOOQ8IZA3 346 aaPredicted RBP7.81□□□□□ -1.16
CLN3-220ENST00000566040 LYG1Q8N1E2 194 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 FAM71E2Q8N5Q1 922 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 Q8N9W7 124 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 OR4A4PQ8NGN8 299 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 DYNC2LI1Q8TCX1 351 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 CREB3L1Q96BA8 519 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 DCSTAMPQ9H295 470 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 RDH8Q9NYR8 311 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 KCNIP1Q9NZI2 227 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 CEPT1Q9Y6K0 416 aa7.81□□□□□ -1.16
CLN3-220ENST00000566040 PRKDCP78527 4128 aaKnown RBP7.8□□□□□ -1.16
CLN3-220ENST00000566040 TRAV18A0A075B6X5 111 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 A0A0A6YYH2 397 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 IGKV1D-13A0A0B4J2D9 117 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 A6NJ64 397 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 XRCC3O43542 346 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 HPGDSO60760 199 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 TMEM127O75204 238 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 TUSC2O75896 110 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 DIRAS3O95661 229 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 GAPDHP04406 335 aaKnown RBP7.8□□□□□ -1.16
CLN3-220ENST00000566040 IGKV1-13P0DP09 117 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 ELK1P19419 428 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 CD1BP29016 333 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 F2RL1P55085 397 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 SSBP2P81877 361 aaPredicted RBP7.8□□□□□ -1.16
CLN3-220ENST00000566040 PNLIPRP3Q17RR3 467 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 CCDC144NLQ6NUI1 221 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 FAM71F2Q6NXP2 309 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 GLDNQ6ZMI3 551 aaPredicted RBP7.8□□□□□ -1.16
CLN3-220ENST00000566040 C16orf82Q7Z2V1 217 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 KLHDC1Q8N7A1 406 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 SAMD12Q8N8I0 201 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 ZNF383Q8NA42 475 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 OR2AK2Q8NG84 335 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 CAPSLQ8WWF8 208 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 KCTD12Q96CX2 325 aaKnown RBP7.8□□□□□ -1.16
CLN3-220ENST00000566040 NPFFR1Q9GZQ6 430 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 BEX1Q9HBH7 125 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 ABCB10Q9NRK6 738 aa7.8□□□□□ -1.16
CLN3-220ENST00000566040 A0A1B0GUS0 222 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 H0YJW9 148 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 H3BMQ9 156 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 BRS3P32247 399 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 CEACAM6P40199 344 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 BRWD1-AS2P59051 145 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 TAS2R20P59543 309 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 ARFRP1Q13795 201 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 MRGPRG-AS1Q2M3A8 158 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 ABCA11PQ4W5N1 156 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 ZNF660Q6AZW8 331 aaPredicted RBP7.79□□□□□ -1.16
CLN3-220ENST00000566040 GPR141Q7Z602 305 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 MOB3BQ86TA1 216 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 TGIF2LXQ8IUE1 241 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 CLVS1Q8IUQ0 354 aaPredicted RBP7.79□□□□□ -1.16
CLN3-220ENST00000566040 C3orf56Q8N813 242 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 OR4C13Q8NGP0 309 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 DDB2Q92466 427 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 HSPB9Q9BQS6 159 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 RAB9BQ9NP90 201 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 ZNF107Q9UII5 783 aaPredicted RBP7.79□□□□□ -1.16
CLN3-220ENST00000566040 PITPNC1Q9UKF7 332 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 RNF150Q9ULK6 438 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 MGAT4AQ9UM21 535 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 MOB4Q9Y3A3 225 aa7.79□□□□□ -1.16
CLN3-220ENST00000566040 MEIS3P1A6NDR6 274 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 BET1O15155 118 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 TSPAN15O95858 294 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 CRYBA1P05813 215 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 TMEM11P17152 192 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 NAT1P18440 290 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 ZBTB25P24278 435 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 MNDAP41218 407 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 RANBP1P43487 201 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 RPL5P46777 297 aaKnown RBP7.78□□□□□ -1.16
CLN3-220ENST00000566040 NDPQ00604 133 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 CFHR3Q02985 330 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 HNF4GQ14541 408 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 KIR2DS1Q14954 304 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 SHISA2Q6UWI4 295 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 FAM131AQ6UXB0 335 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 HOGA1Q86XE5 327 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 CROCCP3Q8IVE0 287 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 DRAXINQ8NBI3 349 aaPredicted RBP7.78□□□□□ -1.16
CLN3-220ENST00000566040 OR5AN1Q8NGI8 311 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 ISOC1Q96CN7 298 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 SLIRPQ9GZT3 109 aaKnown RBP7.78□□□□□ -1.16
CLN3-220ENST00000566040 RAB18Q9NP72 206 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 SDHAF2Q9NX18 166 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 COMMD3Q9UBI1 195 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 ANXA10Q9UJ72 324 aa7.78□□□□□ -1.16
CLN3-220ENST00000566040 LINC00473A8K010 186 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms