RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CMSS1Q9BQ75 279 aaKnown RBP16.29■□□□□ 0.2
CLN3-219ENST00000565778 RAB22AQ9UL26 194 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 PRKDCP78527 4128 aaKnown RBP16.29■□□□□ 0.2
CLN3-219ENST00000565778 ATP6V1G2O95670 118 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 ZBTB25P24278 435 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 CNTFRP26992 372 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 FOXE3Q13461 319 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 ETV3LQ6ZN32 361 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 LCNL1Q6ZST4 164 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 IFI27L2Q9H2X8 130 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 Q9N2K0 584 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 C12orf4Q9NQ89 552 aa16.28■□□□□ 0.2
CLN3-219ENST00000565778 FOXI3A8MTJ6 420 aaPredicted RBP16.27■□□□□ 0.2
CLN3-219ENST00000565778 ELANEP08246 267 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 SCTP09683 121 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 HLA-DRB3P79483 266 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 RPL39P5Q59GN2 51 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 LIN54Q6MZP7 749 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 ABHD14BQ96IU4 210 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 DUX3Q96PT4 197 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 GHITMQ9H3K2 345 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 OR1A1Q9P1Q5 309 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 KIAA1456Q9P272 454 aa16.27■□□□□ 0.2
CLN3-219ENST00000565778 TRAV1-2A0A0B4J238 106 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 TMEM272A0A1B0GTI8 110 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 NBR2O15453 112 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 IGF1P05019 195 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 MYL9P24844 172 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 MRPS15P82914 257 aaKnown RBP16.26■□□□□ 0.19
CLN3-219ENST00000565778 PLA2G7Q13093 441 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 PLAC9Q5JTB6 97 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 FAM71F2Q6NXP2 309 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 EDARADDQ8WWZ3 215 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 KCTD7Q96MP8 289 aa16.26■□□□□ 0.19
CLN3-219ENST00000565778 PARP12Q9H0J9 701 aaKnown RBP16.26■□□□□ 0.19
CLN3-219ENST00000565778 C11orf54Q9H0W9 315 aaPredicted RBP16.26■□□□□ 0.19
CLN3-219ENST00000565778 TRDV1A0A1B0GX56 115 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CCL24O00175 119 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 ITGB1BP1O14713 200 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 LDLRAD4O15165 306 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 IGHG4P01861 327 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CT45A6P0DMU7 189 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CT45A5P0DMU8 189 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CT45A7P0DMV0 189 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 OR5H8P0DN80 308 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 MC5RP33032 325 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CDX1P47902 265 aaPredicted RBP16.25■□□□□ 0.19
CLN3-219ENST00000565778 RAB25P57735 213 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 OR10A3P58181 314 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 C5orf64Q2M2E5 130 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 FAM131AQ6UXB0 335 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 GLDNQ6ZMI3 551 aaPredicted RBP16.25■□□□□ 0.19
CLN3-219ENST00000565778 NPBQ8NG41 125 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 RAB3CQ96E17 227 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 P2RX4Q99571 388 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 CHCHD6Q9BRQ6 235 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 AGMATQ9BSE5 352 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 MCRIP2Q9BUT9 160 aaKnown RBP16.25■□□□□ 0.19
CLN3-219ENST00000565778 GPR61Q9BZJ8 451 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 NDUFB11Q9NX14 153 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 RNF150Q9ULK6 438 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 WSB1Q9Y6I7 421 aa16.25■□□□□ 0.19
CLN3-219ENST00000565778 IFITM5A6NNB3 132 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 TRDCB7Z8K6 153 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 H7C2Y5 167 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 MRPS14O60783 128 aaKnown RBP16.24■□□□□ 0.19
CLN3-219ENST00000565778 GSTP1P09211 210 aaKnown RBP16.24■□□□□ 0.19
CLN3-219ENST00000565778 CD3GP09693 182 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 RAB3BP20337 219 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 HOXD3P31249 432 aaPredicted RBP16.24■□□□□ 0.19
CLN3-219ENST00000565778 GABARAPL2P60520 117 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 KIR2DS1Q14954 304 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 TMEM65Q6PI78 240 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 CD200R1LQ6Q8B3 271 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 DPF1Q92782 380 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 RAX2Q96IS3 184 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 OR51J1Q9H342 316 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 Q9H521 79 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 PARP11Q9NR21 331 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 ZNF221Q9UK13 617 aa16.24■□□□□ 0.19
CLN3-219ENST00000565778 SHISA3A0PJX4 238 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 HLA-DRB1P01911 266 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 KRTAP10-11P60412 298 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 CFHR3Q02985 330 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 DEFB121Q5J5C9 76 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 C22orf42Q6IC83 251 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 RNF152Q8N8N0 203 aa16.23■□□□□ 0.19
CLN3-219ENST00000565778 IGHV7-81A0A0B4J1V7 117 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 OR5H14A6NHG9 310 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 G3V318 75 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 ATP6V0E1O15342 81 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 GALP22466 123 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 GADD45AP24522 165 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 PLGLAQ15195 96 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 DEFB136Q30KP8 78 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 MOGAT2Q3SYC2 334 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 SPARTQ8N0X7 666 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 DRAXINQ8NBI3 349 aaPredicted RBP16.22■□□□□ 0.19
CLN3-219ENST00000565778 OR10R2Q8NGX6 335 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 OR8U1Q8NH10 309 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms