RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC23A1Q9UHI7 598 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 V9GY05 133 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 IGHV7-81A0A0B4J1V7 117 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 IGKV1-6A0A0C4DH72 117 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 K7EIL1 84 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 ST8SIA5O15466 376 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 NDUFA3O95167 84 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 ELANEP08246 267 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 SCTP09683 121 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 CDX1P47902 265 aaPredicted RBP11.63□□□□□ -0.55
CLN3-213ENST00000565047 RAB11BQ15907 218 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 MOB1BQ7L9L4 216 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 ZNF367Q7RTV3 350 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 ZNF695Q8IW36 515 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 OR2AK2Q8NG84 335 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 MRAPQ8TCY5 172 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 IL1F10Q8WWZ1 152 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 PTX4Q96A99 478 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 URM1Q9BTM9 101 aaKnown RBP11.63□□□□□ -0.55
CLN3-213ENST00000565047 ABRACLQ9P1F3 81 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 OR1A1Q9P1Q5 309 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 RAB26Q9ULW5 256 aa11.63□□□□□ -0.55
CLN3-213ENST00000565047 TRAV1-2A0A0B4J238 106 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 TMEM272A0A1B0GTI8 110 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 HLA-DRB1P01911 266 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 VEGFCP49767 419 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 OR10A3P58181 314 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 HLA-DRB3P79483 266 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 KIR2DS1Q14954 304 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 MMDQ15546 238 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 C5orf64Q2M2E5 130 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 RPL39P5Q59GN2 51 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 C19orf54Q5BKX5 351 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 NR2C2APQ86WQ0 139 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 KLHL30-AS1Q8NEE0 82 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 OR5AN1Q8NGI8 311 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 KCTD7Q96MP8 289 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 GON7Q9BXV9 100 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 TOLLIPQ9H0E2 274 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 C11orf54Q9H0W9 315 aaPredicted RBP11.62□□□□□ -0.55
CLN3-213ENST00000565047 NDUFB11Q9NX14 153 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 PIPOXQ9P0Z9 390 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 STEAP1Q9UHE8 339 aa11.62□□□□□ -0.55
CLN3-213ENST00000565047 TRDV1A0A1B0GX56 115 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 WI2-2373I1.2A0A1W2PRP0 233 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 ERICH4A6NGS2 130 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 H0YJW9 148 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 RAB29O14966 203 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 NBR2O15453 112 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 ATP6V1G2O95670 118 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 IGLV1-40P01703 118 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 SLC2A2P11168 524 aaPredicted RBP11.61□□□□□ -0.55
CLN3-213ENST00000565047 SNRPBP14678 240 aaKnown RBP11.61□□□□□ -0.55
CLN3-213ENST00000565047 GALP22466 123 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 PSMD7P51665 324 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 MOGAT2Q3SYC2 334 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 ABHD14BQ96IU4 210 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 DUX3Q96PT4 197 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 CHCHD6Q9BRQ6 235 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 GHITMQ9H3K2 345 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 CHMP1AQ9HD42 196 aaPredicted RBP11.61□□□□□ -0.55
CLN3-213ENST00000565047 C12orf4Q9NQ89 552 aa11.61□□□□□ -0.55
CLN3-213ENST00000565047 IFITM5A6NNB3 132 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 G3V318 75 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 CCL24O00175 119 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 RAB27BO00194 218 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 DENRO43583 198 aaKnown RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 RRP9O43818 475 aaKnown RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 MRPS14O60783 128 aaKnown RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 EGR2P11161 476 aaPredicted RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 ZBTB25P24278 435 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 HOXD3P31249 432 aaPredicted RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 CRIP2P52943 208 aaPredicted RBP11.6□□□□□ -0.55
CLN3-213ENST00000565047 GABARAPL2P60520 117 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 NDPQ00604 133 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 FHL3Q13643 280 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 HES5Q5TA89 166 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 UBE2UQ5VVX9 321 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 MINDY2Q8NBR6 621 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 OR56B1Q8NGI3 324 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 SETD6Q8TBK2 473 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 KLK15Q9H2R5 256 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 OR51J1Q9H342 316 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 RAB22AQ9UL26 194 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 MGAT4AQ9UM21 535 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 FBXO7Q9Y3I1 522 aa11.6□□□□□ -0.55
CLN3-213ENST00000565047 NUDT19A8MXV4 375 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 ATP6V0E1O15342 81 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 VDAC1P21796 283 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 CEACAM6P40199 344 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 LINC00205P59089 165 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 DEFB136Q30KP8 78 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 CXorf66Q5JRM2 361 aaPredicted RBP11.59□□□□□ -0.55
CLN3-213ENST00000565047 LIN54Q6MZP7 749 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 FAM131AQ6UXB0 335 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 GLDNQ6ZMI3 551 aaPredicted RBP11.59□□□□□ -0.55
CLN3-213ENST00000565047 SPARTQ8N0X7 666 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 CMSS1Q9BQ75 279 aaKnown RBP11.59□□□□□ -0.55
CLN3-213ENST00000565047 BLOC1S6Q9UL45 172 aa11.59□□□□□ -0.55
CLN3-213ENST00000565047 OR5H14A6NHG9 310 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms