RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
CLK3-216ENST00000564468 CHPT1Q8WUD6 406 aa10.64□□□□□ -0.71
CLK3-216ENST00000564468 RASL11BQ9BPW5 248 aa10.64□□□□□ -0.71
CLK3-216ENST00000564468 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLK3-216ENST00000564468 LIN7CQ9NUP9 197 aaKnown RBP10.64□□□□□ -0.71
CLK3-216ENST00000564468 KCNK7Q9Y2U2 307 aa10.64□□□□□ -0.71
CLK3-216ENST00000564468 ETV7Q9Y603 341 aa10.64□□□□□ -0.71
CLK3-216ENST00000564468 PLXNB1O43157 2135 aa10.64□□□□□ -0.71
CLK3-216ENST00000564468 SAA2-SAA4A0A096LPE2 208 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 ST8SIA5O15466 376 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 FABP7O15540 132 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 RRP9O43818 475 aaKnown RBP10.63□□□□□ -0.71
CLK3-216ENST00000564468 IGHG2P01859 326 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 GSTP1P09211 210 aaKnown RBP10.63□□□□□ -0.71
CLK3-216ENST00000564468 SAA2P0DJI9 122 aaPredicted RBP10.63□□□□□ -0.71
CLK3-216ENST00000564468 CD28P10747 220 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 SNRPBP14678 240 aaKnown RBP10.63□□□□□ -0.71
CLK3-216ENST00000564468 DTYMKP23919 212 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 CDNFQ49AH0 187 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 IDNKQ5T6J7 187 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 SLC35E3Q7Z769 313 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 OR10J5Q8NHC4 309 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 LGALS14Q8TCE9 139 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 NABP2Q9BQ15 211 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 ABCG5Q9H222 651 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 IFI27L2Q9H2X8 130 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 ZNF221Q9UK13 617 aa10.63□□□□□ -0.71
CLK3-216ENST00000564468 PSMB11A5LHX3 300 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 OR5H14A6NHG9 310 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 SH2D7A6NKC9 451 aaPredicted RBP10.62□□□□□ -0.71
CLK3-216ENST00000564468 TRIM64CA6NLI5 447 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 TSPAN15O95858 294 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 CLEC2LP0C7M8 214 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 MC5RP33032 325 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 OR3A3P47888 321 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 SLC35B1P78383 322 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 NSUN5P1Q3KNT7 163 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 HACD4Q5VWC8 232 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 Q6ZS49 121 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 Q8N9W7 124 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 OR4F17Q8NGA8 305 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 FAM110DQ8TAY7 271 aaPredicted RBP10.62□□□□□ -0.71
CLK3-216ENST00000564468 YIPF6Q96EC8 236 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 OR4F4Q96R69 305 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 CITED2Q99967 270 aaPredicted RBP10.62□□□□□ -0.71
CLK3-216ENST00000564468 ZNF251Q9BRH9 671 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 AGMATQ9BSE5 352 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 CABLES2Q9BTV7 478 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 GON7Q9BXV9 100 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 MRPL20Q9BYC9 149 aaKnown RBP10.62□□□□□ -0.71
CLK3-216ENST00000564468 TOLLIPQ9H0E2 274 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 C11orf54Q9H0W9 315 aaPredicted RBP10.62□□□□□ -0.71
CLK3-216ENST00000564468 DCSTAMPQ9H295 470 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 RNF167Q9H6Y7 350 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 RHBDL2Q9NX52 303 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 OR1A1Q9P1Q5 309 aa10.62□□□□□ -0.71
CLK3-216ENST00000564468 A0A0A6YYH2 397 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 A6NJ64 397 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 ZNF736B4DX44 427 aaPredicted RBP10.61□□□□□ -0.71
CLK3-216ENST00000564468 AP4M1O00189 453 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 CTXN2P0C2S0 81 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 GPR12P47775 334 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 CD83Q01151 205 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 MMDQ15546 238 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 PNLIPRP3Q17RR3 467 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 COMMD1Q8N668 190 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.61□□□□□ -0.71
CLK3-216ENST00000564468 ABHD14BQ96IU4 210 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 GINS4Q9BRT9 223 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 DIABLOQ9NR28 239 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 PLSCR3Q9NRY6 295 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 RDH8Q9NYR8 311 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 KIAA1456Q9P272 454 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 SPATA2Q9UM82 520 aa10.61□□□□□ -0.71
CLK3-216ENST00000564468 TSSC4Q9Y5U2 329 aaPredicted RBP10.61□□□□□ -0.71
CLK3-216ENST00000564468 TRBV6-7A0A0A0MS04 114 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 IGKV1-6A0A0C4DH72 117 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 TCRBV4S1A1TA0A5B7 111 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 BET1O15155 118 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 RBBP9O75884 186 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 GSTT2P0CG29 244 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 GSTT2BP0CG30 244 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 SOX6P35712 828 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 GNG2P59768 71 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 ACTBP60709 375 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 FAM71E2Q8N5Q1 922 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 R3HDM4Q96D70 268 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 RNF5Q99942 180 aa10.6□□□□□ -0.71
CLK3-216ENST00000564468 ZNF230Q9UIE0 474 aaPredicted RBP10.6□□□□□ -0.71
CLK3-216ENST00000564468 RBM7Q9Y580 266 aaKnown RBP10.6□□□□□ -0.71
CLK3-216ENST00000564468 H7C2Y5 167 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 NBR2O15453 112 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 CT45A6P0DMU7 189 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 CT45A5P0DMU8 189 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 CT45A7P0DMV0 189 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 F2RL1P55085 397 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 ZNF260Q3ZCT1 412 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 RPL39P5Q59GN2 51 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 IGSF11Q5DX21 431 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 STPG2Q8N412 459 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms