RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC23A1Q9UHI7 598 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 SCOCQ9UIL1 159 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 LSM4Q9Y4Z0 139 aaKnown RBP13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 FOXI3A8MTJ6 420 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 G3V318 75 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 RAB29O14966 203 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 LUMP51884 338 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 RAB25P57735 213 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 OR11H1Q8NG94 326 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 PLEKHJ1Q9NW61 149 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 HSF4Q9ULV5 492 aa13.4□□□□□ -0.26
VPS9D1-203ENST00000563798 KMT2CQ8NEZ4 4911 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 TRAV41A0A0B4J266 112 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 OR5H14A6NHG9 310 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 SLC17A2O00624 439 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 CT45A6P0DMU7 189 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 CT45A5P0DMU8 189 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 CT45A7P0DMV0 189 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 MC5RP33032 325 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 INSL3P51460 131 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 MED22Q15528 200 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 TRAM1Q15629 374 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 ZNF660Q6AZW8 331 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 TMEM65Q6PI78 240 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 TMEM91Q6ZNR0 172 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 OR5AN1Q8NGI8 311 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 IL1F10Q8WWZ1 152 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 UFD1Q92890 307 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 GFI1Q99684 422 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 RNF5Q99942 180 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 URM1Q9BTM9 101 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 KCNK15Q9H427 330 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 GNB4Q9HAV0 340 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 KIAA1456Q9P272 454 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 MGAT4AQ9UM21 535 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 VSIG4Q9Y279 399 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 WSB1Q9Y6I7 421 aa13.39□□□□□ -0.27
VPS9D1-203ENST00000563798 SEC14L6B5MCN3 397 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 ST8SIA5O15466 376 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 RBBP9O75884 186 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 OR8U8P0C7N1 319 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 NHLRC4P0CG21 123 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 PSMA1P25786 263 aaKnown RBP13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 RAB9AP51151 201 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 ASPHD1Q5U4P2 390 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 LIPKQ5VXJ0 399 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 TCTEX1D1Q8N7M0 179 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 OR1N2Q8NGR9 330 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 PTX4Q96A99 478 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 PARP11Q9NR21 331 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 NKX1-2Q9UD57 310 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 TPRKBQ9Y3C4 175 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 TENM3Q9P273 2699 aa13.38□□□□□ -0.27
VPS9D1-203ENST00000563798 NBEAL2Q6ZNJ1 2754 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 H0YJW9 148 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 RRHO14718 337 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 SOCS1O15524 211 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 ARL6IP5O75915 188 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 ARSBP15848 533 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 ZBTB25P24278 435 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 TMEM50BP56557 158 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 ZNF616Q08AN1 781 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 RPL39P5Q59GN2 51 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 FAM131AQ6UXB0 335 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 EDARADDQ8WWZ3 215 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 TMEM203Q969S6 136 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 WWC2-AS2Q96NR7 200 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 PARP12Q9H0J9 701 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 CHMP1AQ9HD42 196 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 Q9N2K0 584 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 AK3Q9UIJ7 227 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 NUBP2Q9Y5Y2 271 aa13.37□□□□□ -0.27
VPS9D1-203ENST00000563798 PROP1O75360 226 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 EGR2P11161 476 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 CPEP16870 476 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 RANBP1P43487 201 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 CX3CL1P78423 397 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 HLA-DRB3P79483 266 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 NDPQ00604 133 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 MLLT11Q13015 90 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 CD200R1LQ6Q8B3 271 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 NRG4Q8WWG1 115 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 C11orf54Q9H0W9 315 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 C12orf4Q9NQ89 552 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 WASHC3Q9Y3C0 194 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 FBXO7Q9Y3I1 522 aa13.36□□□□□ -0.27
VPS9D1-203ENST00000563798 LDLRAD4O15165 306 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 RGS10O43665 173 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 SOX15O60248 233 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 CEACAM6P40199 344 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 AQP4P55087 323 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 RPS25P62851 125 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 GNB1P62873 340 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 ZNF260Q3ZCT1 412 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 SETD6Q8TBK2 473 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 ABHD14BQ96IU4 210 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 HDHD3Q9BSH5 251 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 TOLLIPQ9H0E2 274 aa13.35□□□□□ -0.27
VPS9D1-203ENST00000563798 FBXL15Q9H469 300 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms