RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CASTOR1Q8WTX7 329 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 ARHGAP5-AS1Q96IT6 56 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CNBD2Q96M20 576 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 MGLLQ99685 303 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 PECRQ9BY49 303 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 GNB4Q9HAV0 340 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 RAB9BQ9NP90 201 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 A0A0B4J203 849 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 FCN1O00602 326 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 LDLRAD4O15165 306 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 IGHG4P01861 327 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 IGF1P05019 195 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 CD3GP09693 182 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 PSMB8P28062 276 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 PPIFP30405 207 aaKnown RBP13.83□□□□□ -0.2
HDDC3-205ENST00000559898 FOXE3Q13461 319 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 RAB11BQ15907 218 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 C2orf76Q3KRA6 126 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 DEFB121Q5J5C9 76 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 LY6G6FQ5SQ64 297 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 PRSS48Q7RTY5 328 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 COMMD1Q8N668 190 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 OR2AK2Q8NG84 335 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 OR8H1Q8NGG4 311 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 AGMATQ9BSE5 352 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 ISYNA1Q9NPH2 558 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 RNF150Q9ULK6 438 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 KCNK7Q9Y2U2 307 aa13.83□□□□□ -0.2
HDDC3-205ENST00000559898 TMEM272A0A1B0GTI8 110 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 NBR2O15453 112 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 VDAC1P21796 283 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 CDX1P47902 265 aaPredicted RBP13.82□□□□□ -0.2
HDDC3-205ENST00000559898 HLA-DRB3P79483 266 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 CXorf66Q5JRM2 361 aaPredicted RBP13.82□□□□□ -0.2
HDDC3-205ENST00000559898 ASPHD1Q5U4P2 390 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 DRAXINQ8NBI3 349 aaPredicted RBP13.82□□□□□ -0.2
HDDC3-205ENST00000559898 MYOZ3Q8TDC0 251 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 OR5B12Q96R08 314 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 C11orf54Q9H0W9 315 aaPredicted RBP13.82□□□□□ -0.2
HDDC3-205ENST00000559898 FBXL15Q9H469 300 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 Q9N2K0 584 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 PARP11Q9NR21 331 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 SLC23A1Q9UHI7 598 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 GAB2Q9UQC2 676 aa13.82□□□□□ -0.2
HDDC3-205ENST00000559898 TRBV6-6A0A0A6YYG2 114 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 SOX15O60248 233 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 NDUFA3O95167 84 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 ELANEP08246 267 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 KIR2DS1Q14954 304 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 C5orf64Q2M2E5 130 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 NR2C2APQ86WQ0 139 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 NPBQ8NG41 125 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 MAFIPQ8WZ33 124 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 FAM3DQ96BQ1 224 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 ALX4Q9H161 411 aaPredicted RBP13.81□□□□□ -0.2
HDDC3-205ENST00000559898 OR51J1Q9H342 316 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 ABRACLQ9P1F3 81 aa13.81□□□□□ -0.2
HDDC3-205ENST00000559898 SMIM30A4D0T7 59 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 H0YJW9 148 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 RGS11O94810 467 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 DUS4LO95620 317 aaKnown RBP13.8□□□□□ -0.2
HDDC3-205ENST00000559898 HLA-DRB1P01911 266 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 EGR2P11161 476 aaPredicted RBP13.8□□□□□ -0.2
HDDC3-205ENST00000559898 CEACAM6P40199 344 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 GNB1P62873 340 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 C19orf54Q5BKX5 351 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 C5orf30Q96GV9 206 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 URM1Q9BTM9 101 aaKnown RBP13.8□□□□□ -0.2
HDDC3-205ENST00000559898 ACOT13Q9NPJ3 140 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 ELF5Q9UKW6 265 aaPredicted RBP13.8□□□□□ -0.2
HDDC3-205ENST00000559898 V9GY05 133 aa13.8□□□□□ -0.2
HDDC3-205ENST00000559898 RRP9O43818 475 aaKnown RBP13.79□□□□□ -0.2
HDDC3-205ENST00000559898 IGLV1-40P01703 118 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 ZNF491Q8N8L2 437 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 CLCC1Q96S66 551 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 FAM103A1Q9BTL3 118 aaKnown RBP13.79□□□□□ -0.2
HDDC3-205ENST00000559898 TPSG1Q9NRR2 321 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 STEAP1Q9UHE8 339 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 SCOCQ9UIL1 159 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 HSF4Q9ULV5 492 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 LRRC42Q9Y546 428 aa13.79□□□□□ -0.2
HDDC3-205ENST00000559898 I3L521 148 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 RAB29O14966 203 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 DENRO43583 198 aaKnown RBP13.78□□□□□ -0.2
HDDC3-205ENST00000559898 ARL6IP5O75915 188 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 FHL3Q13643 280 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 TRAM1Q15629 374 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 TBCEQ15813 527 aaPredicted RBP13.78□□□□□ -0.2
HDDC3-205ENST00000559898 ECSCRQ19T08 205 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 LIN54Q6MZP7 749 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 ZNF383Q8NA42 475 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 OR11H1Q8NG94 326 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 OR8U1Q8NH10 309 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 C4orf3Q8WVX3 66 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 PRR25Q96S07 402 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 CMSS1Q9BQ75 279 aaKnown RBP13.78□□□□□ -0.2
HDDC3-205ENST00000559898 PIPOXQ9P0Z9 390 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 A3GALT2U3KPV4 340 aa13.78□□□□□ -0.2
HDDC3-205ENST00000559898 TRAV41A0A0B4J266 112 aa13.77□□□□□ -0.21
HDDC3-205ENST00000559898 RRHO14718 337 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms