RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TMEM50AO95807 157 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 IGLV2-14P01704 120 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 HSPB1P04792 205 aaKnown RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 CECR9P0C854 216 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 NFYBP25208 207 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 PPP1CCP36873 323 aaKnown RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 FHITP49789 147 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ASCL1P50553 236 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 SERF2P84101 59 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C3orf36Q3SXR2 165 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ARSJQ5FYB0 599 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 VWA1Q6PCB0 445 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF66Q6ZN08 573 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 BEND4Q6ZU67 534 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 BHLHA15Q7RTS1 189 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 FAM90A1Q86YD7 464 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ODF3L1Q8IXM7 274 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ZADH2Q8N4Q0 377 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 PINX1Q96BK5 328 aaKnown RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 LURAP1Q96LR2 239 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 CCDC140Q96MF4 163 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 GPHA2Q96T91 129 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 EGLN1Q9GZT9 426 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 RAB9BQ9NP90 201 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 TINAGQ9UJW2 476 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 WASF3Q9UPY6 502 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 AHCTF1Q8WYP5 2266 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C7orf77A4D0Y5 90 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 MBD3L4A6NDZ8 208 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 MBD3L3A6NE82 208 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 MBD3L5A6NJ08 208 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 COLCA2A8K830 154 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C1orf196B1AJZ1 125 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C12orf77C9JDV5 145 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 H0YL77 283 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 SPINT2O43291 252 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 NXPH3O95157 252 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 IGKV1-39P01597 117 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 IGKV1-5P01602 117 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 IGKV1D-39P04432 117 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 IFNA4P05014 189 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ADH4P08319 380 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 OR3A1P47881 315 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 HOXA1P49639 335 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 TMEM267Q0VDI3 215 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ATP6V1FQ16864 119 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF585BQ52M93 769 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 KHDC3LQ587J8 217 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF506Q5JVG8 444 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 SPSB3Q6PJ21 355 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 WDR82Q6UXN9 313 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 LURAP1LQ8IV03 231 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 OR10G4Q8NGN3 311 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 MBD3L2Q8NHZ7 208 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 CD300LFQ8TDQ1 290 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 EDARADDQ8WWZ3 215 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C14orf79Q96F83 325 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 CIB3Q96Q77 187 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 HSD17B10Q99714 261 aaKnown RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 OR2D2Q9H210 308 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 SAV1Q9H4B6 383 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 ZMAT4Q9H898 229 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 TIMM9Q9Y5J7 89 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 WDFY3Q8IZQ1 3526 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 IGHV2OR16-5A0A0B4J2B6 119 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 SPAARA0A1B0GVQ0 90 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 OR5H1A6NKK0 313 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 RAB29O14966 203 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 IFNA1P01562 189 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 HBZP02008 142 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 CRYBA1P05813 215 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 SPINK2P20155 84 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 PTAFRP25105 342 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 GABRA2P47869 451 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 HTD2P86397 168 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 ALKBH6Q3KRA9 238 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 AKIRIN2Q53H80 203 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 KRBOX4Q5JUW0 171 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 CXorf67Q86X51 503 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-206ENST00000558338 C11orf53Q8IXP5 236 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF525Q8N782 197 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 PARD6AQ9NPB6 346 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF71Q9NQZ8 489 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-206ENST00000558338 HSPB7Q9UBY9 170 aa6.1□□□□□ -1.43
VPS13C-206ENST00000558338 A0A087WWC5 75 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 TRAV39A0A0B4J263 110 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 IGHV1-18A0A0C4DH31 117 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 MEX3AA1L020 520 aaKnown RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 H3BP45 60 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 PPIHO43447 177 aaKnown RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 PSPNO60542 156 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 NDUFS6O75380 124 aaKnown RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 TNFSF13O75888 250 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 AGFG2O95081 481 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 CLDN14O95500 239 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 OR13C7P0DN81 318 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 IAPPP10997 89 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 TAGLN2P37802 199 aaKnown RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 UBE2KP61086 200 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 RPS23P62266 143 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms