RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PARP12Q9H0J9 701 aaKnown RBP10.89□□□□□ -0.67
SHMT2-228ENST00000557302 IFI27L2Q9H2X8 130 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 C16orf95Q9H693 158 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 RANBP3Q9H6Z4 567 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-228ENST00000557302 IGKV1D-8A0A087WSZ0 117 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 TRBV6-7A0A0A0MS04 114 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 IGHV3-72A0A0B4J1Y9 119 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 OR2F2O95006 317 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 EIF4EP06730 217 aaKnown RBP10.88□□□□□ -0.67
SHMT2-228ENST00000557302 SOX6P35712 828 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 OR3A3P47888 321 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 TAS2R20P59543 309 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 ODF3L1Q8IXM7 274 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 LINC01006Q8NI28 216 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 RBM14Q96PK6 669 aaKnown RBP10.88□□□□□ -0.67
SHMT2-228ENST00000557302 S1PR3Q99500 378 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 GINS4Q9BRT9 223 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 SLC25A33Q9BSK2 321 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 C11orf54Q9H0W9 315 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-228ENST00000557302 GHITMQ9H3K2 345 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 RDH8Q9NYR8 311 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 PIPOXQ9P0Z9 390 aa10.88□□□□□ -0.67
SHMT2-228ENST00000557302 SAA2-SAA4A0A096LPE2 208 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 SMIM31A0A1B0GVY4 71 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 RAB29O14966 203 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 HPGDSO60760 199 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 IGKV1D-33P01593 117 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 IGKV1-33P01594 117 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 CTXN2P0C2S0 81 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 SAA2P0DJI9 122 aaPredicted RBP10.87□□□□□ -0.67
SHMT2-228ENST00000557302 PTHLHP12272 177 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 TMEM11P17152 192 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 CD1BP29016 333 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 HNF4GQ14541 408 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 FBLN7Q53RD9 439 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 FAM71F2Q6NXP2 309 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF833PQ6ZTB9 187 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 OR2T6Q8NHC8 308 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 ISOC1Q96CN7 298 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 ABHD14BQ96IU4 210 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 AGMATQ9BSE5 352 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 TOLLIPQ9H0E2 274 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 RNF114Q9Y508 228 aa10.87□□□□□ -0.67
SHMT2-228ENST00000557302 H3BMQ9 156 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 M0QZK8 103 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 ELK1P19419 428 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 CBX5P45973 191 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 LSAMPQ13449 338 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 CNIH2Q6PI25 160 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 OR2T10Q8NGZ9 312 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF747Q9BV97 191 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 MRPL20Q9BYC9 149 aaKnown RBP10.86□□□□□ -0.67
SHMT2-228ENST00000557302 PRSS22Q9GZN4 317 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 CCDC59Q9P031 241 aaKnown RBP10.86□□□□□ -0.67
SHMT2-228ENST00000557302 ANXA10Q9UJ72 324 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF221Q9UK13 617 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 RNF150Q9ULK6 438 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 MOB4Q9Y3A3 225 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 CEPT1Q9Y6K0 416 aa10.86□□□□□ -0.67
SHMT2-228ENST00000557302 CCDC160A6NGH7 325 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 FAM25AB3EWG3 89 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 FAM25CB3EWG5 89 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 FAM25GB3EWG6 89 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 GPR12P47775 334 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 BLCAPP62952 87 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 EBI3Q14213 229 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 RPL39P5Q59GN2 51 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 HOGA1Q86XE5 327 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 H1FOOQ8IZA3 346 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-228ENST00000557302 GVQW1Q8N7I0 195 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 BEST4Q8NFU0 473 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 DYNC2LI1Q8TCX1 351 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 EAF1Q96JC9 268 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-228ENST00000557302 NABP2Q9BQ15 211 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF251Q9BRH9 671 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF702PQ9H963 129 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 MRPS7Q9Y2R9 242 aaKnown RBP10.85□□□□□ -0.67
SHMT2-228ENST00000557302 SIGLEC9Q9Y336 463 aa10.85□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF736B4DX44 427 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-228ENST00000557302 MOSP00540 346 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 OR8U9P0C7N5 309 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 PRSS3P35030 304 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 PROK1P58294 105 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 ARPC4P59998 168 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 ABCA11PQ4W5N1 156 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 ARSJQ5FYB0 599 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-228ENST00000557302 C11orf88Q6PI97 169 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 Q8N2B8 174 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-228ENST00000557302 OR8U1Q8NH10 309 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 WFDC12Q8WWY7 111 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 OR2D2Q9H210 308 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 IFT46Q9NQC8 304 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 RBM7Q9Y580 266 aaKnown RBP10.84□□□□□ -0.67
SHMT2-228ENST00000557302 NBEAL1Q6ZS30 2694 aa10.84□□□□□ -0.67
SHMT2-228ENST00000557302 MEIS3P1A6NDR6 274 aa10.83□□□□□ -0.68
SHMT2-228ENST00000557302 NCBP2LA6PVI3 153 aaKnown RBP10.83□□□□□ -0.68
SHMT2-228ENST00000557302 RGS5O15539 181 aa10.83□□□□□ -0.68
SHMT2-228ENST00000557302 FGF16O43320 207 aa10.83□□□□□ -0.68
SHMT2-228ENST00000557302 HLA-DQB1P01920 261 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms