RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ETV7Q9Y603 341 aa16.38■□□□□ 0.21
CCDC88C-210ENST00000555995 SMIM30A4D0T7 59 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 PSMB11A5LHX3 300 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 ST8SIA5O15466 376 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 FABP7O15540 132 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 GNB3P16520 340 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 CEACAM6P40199 344 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 PITPNAQ00169 270 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 CD83Q01151 205 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 MOGAT2Q3SYC2 334 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 COMMD1Q8N668 190 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 CITED2Q99967 270 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 NABP2Q9BQ15 211 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 ABCG5Q9H222 651 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 KCNK7Q9Y2U2 307 aa16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 TSSC4Q9Y5U2 329 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-210ENST00000555995 A0A075B6Q4 140 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 A0A0B4J203 849 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 OR5H14A6NHG9 310 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 SH2D7A6NKC9 451 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 AP4M1O00189 453 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 RRP9O43818 475 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 SCTP09683 121 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 DTYMKP23919 212 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 MMDQ15546 238 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 NSUN5P1Q3KNT7 163 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 C5orf24Q7Z6I8 188 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 Q8N9W7 124 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 LGALS14Q8TCE9 139 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 ZNF251Q9BRH9 671 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 CABLES2Q9BTV7 478 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 TOLLIPQ9H0E2 274 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 ZNF221Q9UK13 617 aa16.36■□□□□ 0.21
CCDC88C-210ENST00000555995 GSTP1P09211 210 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 MC5RP33032 325 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 MXD1Q05195 221 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 Q6ZS49 121 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 FAM71E2Q8N5Q1 922 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 OR10J5Q8NHC4 309 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 C11orf54Q9H0W9 315 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 RHBDL2Q9NX52 303 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 OR1A1Q9P1Q5 309 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 KIAA1456Q9P272 454 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 CMYA5Q8N3K9 4069 aa16.35■□□□□ 0.21
CCDC88C-210ENST00000555995 A0A0A6YYH2 397 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 TCRBV4S1A1TA0A5B7 111 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 A6NJ64 397 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 ZNF736B4DX44 427 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 AIREO43918 545 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 RBBP9O75884 186 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 SOX6P35712 828 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 GPR12P47775 334 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 OR3A3P47888 321 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 R3HDM4Q96D70 268 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 AGMATQ9BSE5 352 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 RDH8Q9NYR8 311 aa16.34■□□□□ 0.21
CCDC88C-210ENST00000555995 SNRPBP14678 240 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 ACTBP60709 375 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 PNLIPRP3Q17RR3 467 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 CDNFQ49AH0 187 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 STPG2Q8N412 459 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 DCSTAMPQ9H295 470 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 PLSCR3Q9NRY6 295 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 ZNF580Q9UK33 172 aa16.33■□□□□ 0.2
CCDC88C-210ENST00000555995 TRBV6-7A0A0A0MS04 114 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 BET1O15155 118 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 NBR2O15453 112 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 OR5H8P0DN80 308 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 PF4V1P10720 104 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 SLC6A1P30531 599 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 KHDC1LQ5JSQ8 128 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 IDNKQ5T6J7 187 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 HACD4Q5VWC8 232 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 YIPF6Q96EC8 236 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 ABHD14BQ96IU4 210 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 RNF5Q99942 180 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 GINS4Q9BRT9 223 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 WASHC3Q9Y3C0 194 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 VWFP04275 2813 aa16.32■□□□□ 0.2
CCDC88C-210ENST00000555995 IGKV1-6A0A0C4DH72 117 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 TRIM64CA6NLI5 447 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 ADARB2-AS1A8MUL3 147 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 APOA2P02652 100 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 CTXN2P0C2S0 81 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 GNG2P59768 71 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 RPL39P5Q59GN2 51 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 FAM131AQ6UXB0 335 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 PARP12Q9H0J9 701 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 RNF167Q9H6Y7 350 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 ZFP57Q9NU63 452 aa16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 ZNF107Q9UII5 783 aaPredicted RBP16.31■□□□□ 0.2
CCDC88C-210ENST00000555995 HLA-DRB1P01911 266 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 CLEC2LP0C7M8 214 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 GSTT2P0CG29 244 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 GSTT2BP0CG30 244 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 VDAC1P21796 283 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 F2RL1P55085 397 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 NPBQ8NG41 125 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 OR5AN1Q8NGI8 311 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms