RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SRSF7Q16629 238 aaKnown RBP eCLIP16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 MOGAT2Q3SYC2 334 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 AKIRIN2Q53H80 203 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 FAM53AQ6NSI3 398 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 UNQ5815/PRO19632Q6UWF5 114 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 FAM131AQ6UXB0 335 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 PPP1R27Q86WC6 154 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 MRPL30Q8TCC3 161 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 ARPC1AQ92747 370 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 ORAI1Q96D31 301 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 TSNAXQ99598 290 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 SLC23A1Q9UHI7 598 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 TRBV5-7A0A0A0MS05 114 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 EFCAB10A6NFE3 127 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 CX3CL1P78423 397 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 KIAA0141Q14154 515 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 SMN1Q16637 294 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 TATDN3Q17R31 274 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 ASPHD1Q5U4P2 390 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 GLT8D1Q68CQ7 371 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 FAM46BQ96A09 425 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 RSRP1Q9BUV0 290 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 TMEM59Q9BXS4 323 aa16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 RANGRFQ9HD47 186 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-210ENST00000506042 SORL1Q92673 2214 aa16.27■□□□□ 0.19
SQSTM1-210ENST00000506042 C13orf42A0A1B0GVH6 325 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 H0Y980 276 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 WBP4O75554 376 aaKnown RBP16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 SPDEFO95238 335 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 IFNA6P05013 189 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 CD1AP06126 327 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 CNTFRP26992 372 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 OR3A3P47888 321 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 CBX3Q13185 183 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 HMGN3Q15651 99 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 ODF3L1Q8IXM7 274 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 KCNG3Q8TAE7 436 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 SETD6Q8TBK2 473 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 DERL3Q96Q80 235 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 FBXL15Q9H469 300 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 S100A14Q9HCY8 104 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 ZNF355PQ9NSJ1 428 aa16.26■□□□□ 0.19
SQSTM1-210ENST00000506042 IGHV4OR15-8A0A075B7B6 117 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 A0A087WW49 117 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 A0A1W2PPK0 400 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 MAGEA13PA6NCF6 341 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 H3BUA1 57 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 ITGB1BP1O14713 200 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 APOA2P02652 100 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 CPEP16870 476 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 CELP19835 753 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 ZBTB25P24278 435 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 LRRC36Q1X8D7 754 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 ZNF562Q6V9R5 426 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 GTSCR1Q86UQ5 136 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 CYGBQ8WWM9 190 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 PGLYRP3Q96LB9 341 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 METTL1Q9UBP6 276 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 ZNF221Q9UK13 617 aa16.25■□□□□ 0.19
SQSTM1-210ENST00000506042 PNMA8CA0A1B0GUJ8 204 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 BAG2O95816 211 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 TRGV3P03979 118 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 RPS11P62280 158 aaKnown RBP eCLIP16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 ST3GAL4Q11206 333 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 MS4A15Q8N5U1 240 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 ZFP41Q8N8Y5 198 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 IL17DQ8TAD2 202 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 TMEM68Q96MH6 324 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 SPATA25Q9BR10 227 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 URM1Q9BTM9 101 aaKnown RBP16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 ALX4Q9H161 411 aaPredicted RBP16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 PLEKHJ1Q9NW61 149 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 CNOT2Q9NZN8 540 aaKnown RBP16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 NUBP2Q9Y5Y2 271 aa16.24■□□□□ 0.19
SQSTM1-210ENST00000506042 ST8SIA5O15466 376 aa16.23■□□□□ 0.19
SQSTM1-210ENST00000506042 BPNT1O95861 308 aa16.23■□□□□ 0.19
SQSTM1-210ENST00000506042 WNT4P56705 351 aa16.23■□□□□ 0.19
SQSTM1-210ENST00000506042 IFI27L2Q9H2X8 130 aa16.23■□□□□ 0.19
SQSTM1-210ENST00000506042 CLEC2DQ9UHP7 191 aa16.23■□□□□ 0.19
SQSTM1-210ENST00000506042 LCE6AA0A183 80 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 A8MZ25 164 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 CNIH1O95406 144 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 LALBAP00709 142 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 IGHV3-11P01762 117 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 AADACP22760 399 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 SIGIRRQ6IA17 410 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 PHYHIPQ92561 330 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 RITA1Q96K30 269 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 MS4A10Q96PG2 267 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 TM2D3Q9BRN9 247 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 FAM53CQ9NYF3 392 aa16.22■□□□□ 0.19
SQSTM1-210ENST00000506042 TRIM64CA6NLI5 447 aa16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 IGHV4-30-4P0DP06 118 aa16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 RPS16P62249 146 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 RPS27AP62979 156 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 MRPS15P82914 257 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 C19orf54Q5BKX5 351 aa16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 PDPNQ86YL7 162 aa16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 SVOPQ8N4V2 548 aa16.21■□□□□ 0.19
SQSTM1-210ENST00000506042 DHRSXQ8N5I4 330 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms