RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 MC5RP33032 325 aa7□□□□□ -1.29
USP54-215ENST00000497106 ZNF345Q14585 488 aa7□□□□□ -1.29
USP54-215ENST00000497106 TMEM187Q14656 261 aa7□□□□□ -1.29
USP54-215ENST00000497106 CD177Q8N6Q3 437 aa7□□□□□ -1.29
USP54-215ENST00000497106 ZNF680Q8NEM1 530 aa7□□□□□ -1.29
USP54-215ENST00000497106 OR1S2Q8NGQ3 325 aa7□□□□□ -1.29
USP54-215ENST00000497106 ITLN2Q8WWU7 325 aaPredicted RBP7□□□□□ -1.29
USP54-215ENST00000497106 RPEQ96AT9 228 aa7□□□□□ -1.29
USP54-215ENST00000497106 JTBO76095 146 aa7□□□□□ -1.29
USP54-215ENST00000497106 EGR1P18146 543 aa7□□□□□ -1.29
USP54-215ENST00000497106 SUB1P53999 127 aaKnown RBP eCLIP7□□□□□ -1.29
USP54-215ENST00000497106 ZNRF1Q8ND25 227 aa7□□□□□ -1.29
USP54-215ENST00000497106 GAFA1Q96PS6 74 aa7□□□□□ -1.29
USP54-215ENST00000497106 RTBDNQ9BSG5 229 aaPredicted RBP7□□□□□ -1.29
USP54-215ENST00000497106 F8W036 122 aa7□□□□□ -1.29
USP54-215ENST00000497106 BCL2L11O43521 198 aa7□□□□□ -1.29
USP54-215ENST00000497106 ZNF205O95201 554 aa7□□□□□ -1.29
USP54-215ENST00000497106 NQO2P16083 231 aa7□□□□□ -1.29
USP54-215ENST00000497106 OMGP23515 440 aa7□□□□□ -1.29
USP54-215ENST00000497106 P2RY1P47900 373 aa7□□□□□ -1.29
USP54-215ENST00000497106 BLOC1S1P78537 153 aa7□□□□□ -1.29
USP54-215ENST00000497106 SNTB1Q13884 538 aaKnown RBP7□□□□□ -1.29
USP54-215ENST00000497106 MSI2Q96DH6 328 aaKnown RBP7□□□□□ -1.29
USP54-215ENST00000497106 C12orf57Q99622 126 aa7□□□□□ -1.29
USP54-215ENST00000497106 FGF23Q9GZV9 251 aaPredicted RBP7□□□□□ -1.29
USP54-215ENST00000497106 SDHAF2Q9NX18 166 aa7□□□□□ -1.29
USP54-215ENST00000497106 OR1A1Q9P1Q5 309 aa7□□□□□ -1.29
USP54-215ENST00000497106 KIAA1456Q9P272 454 aa7□□□□□ -1.29
USP54-215ENST00000497106 POMT1Q9Y6A1 747 aa7□□□□□ -1.29
USP54-215ENST00000497106 TNRC6AQ8NDV7 1962 aaKnown RBP7□□□□□ -1.29
USP54-215ENST00000497106 IGKV1D-17A0A075B6S4 117 aa7□□□□□ -1.29
USP54-215ENST00000497106 DEFB108AA8MXU0 73 aa7□□□□□ -1.29
USP54-215ENST00000497106 CD8AP01732 235 aa7□□□□□ -1.29
USP54-215ENST00000497106 FGF2P09038 288 aa7□□□□□ -1.29
USP54-215ENST00000497106 ANOS1P23352 680 aa7□□□□□ -1.29
USP54-215ENST00000497106 UCP1P25874 307 aa7□□□□□ -1.29
USP54-215ENST00000497106 GNG10P50151 68 aa7□□□□□ -1.29
USP54-215ENST00000497106 FLI1Q01543 452 aaPredicted RBP7□□□□□ -1.29
USP54-215ENST00000497106 SP6Q3SY56 376 aa7□□□□□ -1.29
USP54-215ENST00000497106 FAM216BQ8N7L0 139 aa7□□□□□ -1.29
USP54-215ENST00000497106 LRTM2Q8N967 370 aa7□□□□□ -1.29
USP54-215ENST00000497106 WDR89Q96FK6 387 aaPredicted RBP7□□□□□ -1.29
USP54-215ENST00000497106 SLC35D1Q9NTN3 355 aa7□□□□□ -1.29
USP54-215ENST00000497106 LOC105371242A0A075B767 164 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 PPIAL4CA0A0B4J2A2 164 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 FCGR3BO75015 233 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 PPIAL4GP0DN37 164 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 RPL12P30050 165 aaKnown RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 C11orf53Q8IXP5 236 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 PDZD9Q8IXQ8 264 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 UBALD1Q8TB05 177 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 R3HDM4Q96D70 268 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 MMP24Q9Y5R2 645 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 NCKAP5O14513 1909 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 LEUTXA8MZ59 168 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 NDUFS8O00217 210 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 DVL1O14640 695 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SNAPINO95295 136 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 LHBP01229 141 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 CXCL3P19876 107 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 BAXQ07812 192 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 ZNF816Q0VGE8 651 aaPredicted RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 ZNF818PQ6ZRF7 136 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TGIF2LYQ8IUE0 185 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TGIF2LXQ8IUE1 241 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 KAAG1Q9UBP8 84 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 RCL1Q9Y2P8 373 aaKnown RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 FBXO7Q9Y3I1 522 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TRAV39A0A0B4J263 110 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TRAV20A0A0B4J274 112 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 RAB19A4D1S5 217 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 C17orf112F2Z3M2 114 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 F2RL2O00254 374 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 FSTL3O95633 263 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 RPS16P62249 146 aaKnown RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 NCR3LG1Q68D85 454 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TPRX1Q8N7U7 411 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TMEM56Q96MV1 263 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SSBP3Q9BWW4 388 aaPredicted RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 CNTNAP3Q9BZ76 1288 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 PRNDQ9UKY0 176 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 TMEM56-RWDD3S4R434 201 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 MAP1BP46821 2468 aaKnown RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 CUL9Q8IWT3 2517 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 DOCK7Q96N67 2140 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SPTBN2O15020 2390 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SMLR1H3BR10 107 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 RBFOX2O43251 390 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP54-215ENST00000497106 PSPNO60542 156 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SSTR5P35346 364 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 AVPI1Q5T686 147 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 DRAM1Q8N682 238 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 SCARB1Q8WTV0 552 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 CORO2AQ92828 525 aa6.99□□□□□ -1.29
USP54-215ENST00000497106 STRAPQ9Y3F4 350 aaKnown RBP6.99□□□□□ -1.29
USP54-215ENST00000497106 ZNF737O75373 536 aa6.98□□□□□ -1.29
USP54-215ENST00000497106 SSTR2P30874 369 aa6.98□□□□□ -1.29
USP54-215ENST00000497106 LY6G6FQ5SQ64 297 aa6.98□□□□□ -1.29
USP54-215ENST00000497106 FAM71F2Q6NXP2 309 aa6.98□□□□□ -1.29
USP54-215ENST00000497106 SELENOHQ8IZQ5 122 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms