RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KIR2DS4P43632 304 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 KIR2DS1Q14954 304 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 SCCPDHQ8NBX0 429 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 OR10J5Q8NHC4 309 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 CDS2O95674 445 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 EGR1P18146 543 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 PRSS8Q16651 343 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 TBC1D28Q2M2D7 210 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF826PQ6ZT77 177 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 STX12Q86Y82 276 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 LILRB2Q8N423 598 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 SLC25A40Q8TBP6 338 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 TMEM56Q96MV1 263 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 KIAA1456Q9P272 454 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 MPC1Q9Y5U8 109 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 TMEM56-RWDD3S4R434 201 aa13.96□□□□□ -0.17
CCDC88B-210ENST00000494566 ZFHX2Q9C0A1 2572 aaPredicted RBP13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 PPP1R2P9O14990 202 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 SMPD2O60906 423 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 IFNA5P01569 189 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 HOXB1P14653 301 aaPredicted RBP13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 PMELP40967 661 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 PPP1CBP62140 327 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF726P1Q15940 193 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 NMSQ5H8A3 153 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 LFNGQ8NES3 379 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 FAM210BQ96KR6 192 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 GP6Q9HCN6 339 aa13.96□□□□□ -0.18
CCDC88B-210ENST00000494566 A0A1B0GV90 55 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 OR2H2O95918 312 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 VDAC1P21796 283 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 PAX6P26367 422 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 MPV17P39210 176 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 CDX1P47902 265 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 TNFSF10P50591 281 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 HLA-DRB3P79483 266 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 LTC4SQ16873 150 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF295-AS1Q8N0V1 137 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 SCGB1C1Q8TD33 95 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 LOXL4Q96JB6 756 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 YPEL4Q96NS1 127 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 TCEAL7Q9BRU2 100 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 SLC25A22Q9H936 323 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 ARFGEF3Q5TH69 2177 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 OR5B21A6NL26 309 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 WNT9BO14905 357 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 IGHV3-13P01766 116 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 IGHV3-7P01780 117 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 UBE2NP61088 152 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 IL24Q13007 206 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF324BQ6AW86 544 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 Q6P435 159 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 VWA1Q6PCB0 445 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 Q6ZS49 121 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 ATP5SQ99766 215 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 SPIN2AQ99865 258 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 SPIN2BQ9BPZ2 258 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 C11orf1Q9H5F2 150 aa13.95□□□□□ -0.18
CCDC88B-210ENST00000494566 DEFA6Q01524 100 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 FIP1L1Q6UN15 594 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 NANOS1Q8WY41 292 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 ZDHHC11Q9H8X9 412 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 CDH20Q9HBT6 801 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 RYDENQ9NUL5 291 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 TRAPPC2LQ9UL33 140 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 OR2W1Q9Y3N9 320 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 J3QT63 122 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 UCP1P25874 307 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 ID3Q02535 119 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 TLE4Q04727 773 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 FAM185AQ8N0U4 392 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 TMEM178AQ8NBL3 297 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 RBKSQ9H477 322 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 PSENENQ9NZ42 101 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 PHOX2AO14813 284 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 NXPH2O95156 264 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 F2RP25116 425 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 LMO1P25800 156 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 GPX4P36969 197 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF816Q0VGE8 651 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 PSG7Q13046 419 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 ELOVL1Q9BW60 279 aa13.94□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF292O60281 2723 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 RBMXL2O75526 392 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 KRASP01116 189 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 IGKV1-39P01597 117 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 IGKV1D-39P04432 117 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 ADGRG4Q8IZF6 3080 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 TPRX1Q8N7U7 411 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 CABLES2Q9BTV7 478 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 TAS2R30P59541 319 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 SRPXP78539 464 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 BTNL3Q6UXE8 466 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 HAPLN4Q86UW8 402 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 POM121Q96HA1 1249 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 RTL8AQ9BWD3 113 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 RNF115Q9Y4L5 304 aa13.93□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF705GA8MUZ8 300 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 HNF1AP20823 631 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 FOXF2Q12947 444 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms